View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19889_low_24 (Length: 231)
Name: NF19889_low_24
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_low_24 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8447120 - 8446890
Alignment:
| Q |
1 |
aaagggaacaaacaactgtatgatacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaaggacaaagcttcaatccaccttcttcaa |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8447120 |
aaagggaacaaacaactgtatggtacaaatccattggcaaaggcttcaatagatcaatggttagaagctgaaggacaaagcttcaatccaccttcttcaa |
8447021 |
T |
|
| Q |
101 |
ctctggtgtttcagcttgcatttgctcctcgaatgaagatcaaacaagacgaaggagcaattcgacagagtaaagaaaagctcaagaaagtgcttgatgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8447020 |
ctctggtgtttcagcttgcatttgctcctcgaatgaagatcaaacaagacgaaggagcaattcgacagagtaaagaaaagctcaagaaagtgcttgatgt |
8446921 |
T |
|
| Q |
201 |
gtacgataagaggcttggggaaactcgctac |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8446920 |
gtacgataagaggcttggggaaactcgctac |
8446890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University