View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19889_low_25 (Length: 212)
Name: NF19889_low_25
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 31721938 - 31721763
Alignment:
| Q |
20 |
aagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctc |
119 |
Q |
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| T |
31721938 |
aagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctc |
31721839 |
T |
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| Q |
120 |
gtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
195 |
Q |
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| T |
31721838 |
gtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
31721763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 31711232 - 31711057
Alignment:
| Q |
20 |
aagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctc |
119 |
Q |
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| T |
31711232 |
aagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggcctttaatactgataacaagtttggtatgaaacggattccaaaggctc |
31711133 |
T |
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| Q |
120 |
gtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
195 |
Q |
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| T |
31711132 |
gtcaagtgtctaattctaaaggttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
31711057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 195
Target Start/End: Complemental strand, 31719333 - 31719164
Alignment:
| Q |
20 |
aagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctc |
119 |
Q |
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| T |
31719333 |
aagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctc |
31719234 |
T |
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| Q |
120 |
gtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
195 |
Q |
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| T |
31719233 |
gtcaagtgt------ctaaaggttattctggtgatgcgtttgaggctaggcttatatttgagatttctaagacctt |
31719164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 31716400 - 31716237
Alignment:
| Q |
20 |
aagaatacgtatatgaactttatgttgaagttggctggtaatgtaggaggggccttaaacactgataacaagtttggtatgaaacggattccaaaggctc |
119 |
Q |
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|||||||| ||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
31716400 |
aagaatacttatatgaactttatgctgaagttggctggtaatgtaggaggggcattgaacactgataacaagtttggtgtgaaaaggattccaaaggctc |
31716301 |
T |
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| Q |
120 |
gtcaagtgtctaattctaaagtttattctggtgatgcatttgaggctaggcttatatttgagatttctaa |
189 |
Q |
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| T |
31716300 |
gtcaagt------atctaaaggttattctggtgatgcattcgaggctaggcttattttttagatttctaa |
31716237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 31730169 - 31730222
Alignment:
| Q |
142 |
ttattctggtgatgcatttgaggctaggcttatatttgagatttctaagacctt |
195 |
Q |
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||||||| ||||||| ||||||||||| ||||||||||||||||||||| |||| |
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| T |
31730169 |
ttattctcgtgatgcttttgaggctagacttatatttgagatttctaaggcctt |
31730222 |
T |
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