View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19889_low_5 (Length: 459)
Name: NF19889_low_5
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 438
Target Start/End: Original strand, 46416705 - 46417143
Alignment:
| Q |
8 |
cgaagaatattacaacttcttcattttagtgagattaaaatatatttaaacctttcaaaatcataactttaaattttgct--cgtgtttagagtttagac |
105 |
Q |
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| T |
46416705 |
cgaagaaaattacaacttcttcattttagtgagattaaaatatatttaaacatttcaaaatcataactttaaattttgctttcgtgtttagagtttagac |
46416804 |
T |
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| Q |
106 |
acaaattagaccccttttgaatttagttatatgcaatgaagagtggtgatgatagcaacacccattttttaacactcttcaacattcactttttcattag |
205 |
Q |
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| T |
46416805 |
acaaattagaccccttttgaatttatttatatgcaatgaagagtggtgatgatagcaacacttattttttaacactctttaacattcactttttcattag |
46416904 |
T |
|
| Q |
206 |
cttaaatcatactgagtctcacactttgaatatgatttctatttaaagtgattgatcatgcattgatttcatcgaat------nnnnnnntaaataatgt |
299 |
Q |
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| T |
46416905 |
tttaaatcacggtgagtctcacactttgaatataatttctatttaaagtaattgatcatgcattgatttcatcgaataaaaaataaataatgaataatgt |
46417004 |
T |
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| Q |
300 |
tggaaagagggtgtccttattatttttcatgtaatgattaactaatcctcaaaataaaatatttaataataattatgcagtaacgtacacactaacacga |
399 |
Q |
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| T |
46417005 |
tggaaagtgggtgtccttattatttttcatgtaatgattaactaatcctcaaaataaaatatttaataataattatgcagtaacttacacactaacacga |
46417104 |
T |
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| Q |
400 |
gattatctcatctcctcatatatttcttgtaacttgtga |
438 |
Q |
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| T |
46417105 |
gattatctcatctcctcatatatttcttataacttgtga |
46417143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 6163552 - 6163621
Alignment:
| Q |
186 |
aacattcactttttcattagcttaaatcatactgagtctcacactttgaatatgatttctatttaaagtg |
255 |
Q |
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| T |
6163552 |
aacactcactttttaattggcttaaatcatagtgcgtctcacactttggaaatgagttctacttaaagtg |
6163621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 42474111 - 42474039
Alignment:
| Q |
183 |
ttcaacattcactttttcattagcttaaatcatactgagtctcacactttgaatatgatttctatttaaagtg |
255 |
Q |
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| T |
42474111 |
ttcaacactcacttcctaattagcttaaatcatagtgggtctcacactttgaaaatgaattccacttaaagtg |
42474039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 26001592 - 26001494
Alignment:
| Q |
171 |
tttttaacactcttcaacattcactttttcattagcttaaatcatactgagtctcacactttgaatatgatttctatttaaagtgattgatcatgcatt |
269 |
Q |
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|||| |||||||| ||| | ||||||| | ||| ||||||| |||| | ||||||||||||||| |||| || |||||||||||| |||||| |||| |
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| T |
26001592 |
ttttcaacactctccaatactcactttctaattggcttaaaacataataggtctcacactttgaaaatgagtttcatttaaagtgatggatcatacatt |
26001494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 46205562 - 46205642
Alignment:
| Q |
183 |
ttcaacattcactttttcattagcttaaatcatactgagtctcacactttgaatatgatttctatttaaagtgattgatca |
263 |
Q |
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| T |
46205562 |
ttcaacattcactttttaattggctgaaatcatggtaggtctcacactttggaaatgagttccacttaaagtgatagatca |
46205642 |
T |
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