View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19889_low_6 (Length: 437)
Name: NF19889_low_6
Description: NF19889
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19889_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 11247664 - 11247763
Alignment:
| Q |
249 |
agagtttgtacataatgttttcttactcgtgtatggctgaacaacagaggtgtgaactgtctgttgccgtgtgtaacgtgcaacgatccgcatgaggaca |
348 |
Q |
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| T |
11247664 |
agagtttgtacataatgttttcttaatcgtgtatggttgaacaacagaggtgtaaactgtctgttgccgtgtgtaatgtgcaacgatccgcatgaggaca |
11247763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 37 - 152
Target Start/End: Original strand, 11247532 - 11247645
Alignment:
| Q |
37 |
tgtttatataaatttctgtttgtaaagacaaaaagtaaagaatacaaatagattattagtgtgg-aacccgagaagaatgggcattattcggtgcggagt |
135 |
Q |
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| T |
11247532 |
tgtttatataaatttctgtttttaaagacaaaaactaaagaatacaaatag---attagtgtggaaacccgagaagaatgggcattattcggtgcggagt |
11247628 |
T |
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| Q |
136 |
gtgtatcgtctttttgt |
152 |
Q |
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| T |
11247629 |
gtatatggtctttttgt |
11247645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 363
Target Start/End: Original strand, 39532968 - 39533005
Alignment:
| Q |
326 |
gtgcaacgatccgcatgaggacagctatcacatttttt |
363 |
Q |
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| T |
39532968 |
gtgcaatgatccgcatgaggacagttatcacatttttt |
39533005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 106 - 429
Target Start/End: Original strand, 29206511 - 29206836
Alignment:
| Q |
106 |
gagaagaatgggcattattcggtgcggagtgtgtatcgtctttttgtcgaagatattgtggataataaccacctatgaaagaatggttattggagtggaa |
205 |
Q |
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| T |
29206511 |
gagaagaatgggcattattcggtaccaagtgcgtatcgtctttgtgtcaaagatattgtgaataatacacacctgagaaggagtggttattggagtggaa |
29206610 |
T |
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| Q |
206 |
ctttgaggttgaaggtttctcctaatgtaaagaatacggtat-gagagtttgtacataatgttttcttactcgtgtatggctgaacaacagaggtgtgaa |
304 |
Q |
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| T |
29206611 |
tttggaagttgaaagtgcctcccaaggtcaagaattcggtgtggcaagtttgtagagaatgttttcctactcgagtacggctgcctagaagaggtgtata |
29206710 |
T |
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| Q |
305 |
ctgtctgttgccgtgtgtaacgtgcaacgatccgcatgaggacagctatca-cattttttccactacggtacaacagttagtatttggagagatgctggt |
403 |
Q |
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| T |
29206711 |
ctgtccgtctacgtgtgtaatgtgtaacgacccacacgaagatagttatcatttttttttccagtgctgtacagcagttagtgcttggagagctgctgga |
29206810 |
T |
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| Q |
404 |
gtttggcatttaattgaacctttgct |
429 |
Q |
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| T |
29206811 |
gtttggcatttaattgagcctttgct |
29206836 |
T |
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