View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_high_11 (Length: 382)
Name: NF1988_high_11
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_11 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 16 - 382
Target Start/End: Complemental strand, 50463 - 50097
Alignment:
| Q |
16 |
atggatgttaaactcgaacatggatggtaatcgaattaatttaattgatttgggttagatttttaggttcatatgatcattggtttggttcttatactcc |
115 |
Q |
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| T |
50463 |
atggatgttaaactcgaacatggatggtaatcgaattaatttaattgatttgggttagatttttaggttcatatgatcattggtttggttcttatactcc |
50364 |
T |
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| Q |
116 |
caatgaagtgtatgtaaatnnnnnnntaaatactttaatttgaggaagaacatacacttaagtttaaatggactcatatttgagagattatcggtgtatg |
215 |
Q |
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| T |
50363 |
caatgaagtgtatgtaaataaaaaaataaatactttaatttgaagaagaacatacacttaagtttgaatggactcatatttgagagattatcggtgtatg |
50264 |
T |
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| Q |
216 |
aaatataagttagaatcgcaccctaaatgaaaaggtagacattaaacaaaatacaaatcatatagctcatatatcaagtgaacgttaaaaaatatgtaac |
315 |
Q |
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| T |
50263 |
aaatataagttagaatcgcaccttaaatgaaaaggtagacattaaacaacatataaatcatatagctcatatatcaagtgaacgttaaaaaatatgtaac |
50164 |
T |
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| Q |
316 |
taaagataaaatatgaataaattcaatacctctctttcaattctgacgagattctttgaagaaacaa |
382 |
Q |
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| T |
50163 |
tcaagataaaatatgaataaattcaatacctctctttcagttctgacgagattctttgaaaaaacaa |
50097 |
T |
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