View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_high_13 (Length: 364)
Name: NF1988_high_13
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 43062678 - 43062336
Alignment:
| Q |
19 |
gtgaggtcccgaaaacgcagaaattaaagtttaagagaaaatcacaacgtggcttgtgcgccacacttttgaaaacgttactttactttactagttagtt |
118 |
Q |
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| T |
43062678 |
gtgaggtcccgaaaacgcagaaattaaagtgtaagagaaaatcacaacgtggcttgtgcgccacacttttgaaaacgttactttactttactagtt---- |
43062583 |
T |
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| Q |
119 |
ctaagcacaatacaatatgagccatttcagtgcagtgtagtgtagttaattgagttatgttgccccctatcgtcgttgatctcaacgacattaaacaaaa |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062582 |
ctaagcacaatacaatatgagccatttcagtgtagtgtagtgtagttaattgagttatgttgccccctatcgtcgttgatctcaacgacattaaacaaaa |
43062483 |
T |
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| Q |
219 |
actctcccttcagtttcgtcctattcaacgttcctttcagttttgggttcgagccgttgatatttacaccggatacaaggttcctttct----------- |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062482 |
actctcccttcagtttcgtcctattcaacgttcctttcagttttgggttcgagccgttgatatttacaccggatacaaggttcctttctctctctctctc |
43062383 |
T |
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| Q |
308 |
-ctctaaccaaattgctacattaattaattaactatgcatgcttcat |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062382 |
tctctaaccaaattgctacattaattaattaactatgcatgcttcat |
43062336 |
T |
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