View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_high_15 (Length: 355)
Name: NF1988_high_15
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 1418254 - 1418021
Alignment:
| Q |
18 |
attgcaaatgcggaaaatctaatttgaagaaaagaattcaattttatttgtccaactttagctgtatttctacaagaaattattcatcagtaaagactac |
117 |
Q |
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| T |
1418254 |
attgcatatgcggaaaatctaatttgaagaaaagaattcaactttatttgtccaactttagctgtatttctacaagaaattattcatcagtaaagactac |
1418155 |
T |
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| Q |
118 |
tatggat--actaagcacgactcaagatatataaaaacact-attataatcaaaccaatagtcattagtaaagtacgaaatcaattaagccaccaaatta |
214 |
Q |
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||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1418154 |
tatggatacactaagcacgactcaagatatataaaaacactaattataatcaaaccaatagtcattagtaaagtacaaaatcaattaagccaccaaatta |
1418055 |
T |
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| Q |
215 |
ttaagcttaactctttatgcatactttccaattt |
248 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
1418054 |
ttaagcttaactctttatgcatactttccaattt |
1418021 |
T |
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