View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1988_high_18 (Length: 334)
Name: NF1988_high_18
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 137 - 327
Target Start/End: Complemental strand, 13884978 - 13884788
Alignment:
| Q |
137 |
cggaaaagggtcacaacccaaaataatgcgtatttgtcattccaatctataataatgtgtcattagagttcaacaaatagaagttgaatacaaatttaat |
236 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13884978 |
cggaaaagggtcgcaacccaaaataatgcgtatttgtcattccaatctataataatgtgtcattagagttcaacaaatagaagttgaatacaaatttaat |
13884879 |
T |
|
| Q |
237 |
atttcggatttaataaaccaaaggggaaaatacattaacctctcctaagatctacttaaatgtaacatacaccggttctattttcttatca |
327 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13884878 |
atttcggatttaataaaccaaagggaaaaatacattaacctctcctaagatctacttaaatgtaacatacaccggctctattttcttatca |
13884788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13885114 - 13885063
Alignment:
| Q |
1 |
tttttcgtctatattttcttctcatgcgcccttcacattcctaatcttgtcc |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13885114 |
tttttcgtctatattttcttctcatgcgcccttcacattcctaatcttgtcc |
13885063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University