View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_high_19 (Length: 326)
Name: NF1988_high_19
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 38996837 - 38996546
Alignment:
| Q |
19 |
gattttaatccggcaccttaaactccttatctcttataggaaaatgatgtcgnnnnnnnnaagaatttcagaaaaaatgtacaaagaaatcgaaaaagag |
118 |
Q |
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| T |
38996837 |
gattttaatccggcaccttaaactccttatctcttataggaaaatgatgtcgttttttt-aagaatttcagaaaaaatgtacaaagaaatcgaaaaagag |
38996739 |
T |
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| Q |
119 |
gtatagtatttacccgattcaatccaagtcatcggttcatacctgttcaatagcattgccagtccattaggtcgctccacccaattttcggccgtccaat |
218 |
Q |
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| T |
38996738 |
gtatagtatttacccgattcaatccaagtcatcggttcatacccgttcaatagcattgccagtccattaggtcgctccacccaattttcggccgtccaat |
38996639 |
T |
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| Q |
219 |
ccggtttttaaaacaatgtctttaatatcagaatattttgggtgcattttgataaataaaaagaacaaatttatagagatacttacgcctttg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38996638 |
ccggtttttaaaacaatgtctttaatatcagaatattttgggtgcattttgataaataaaaagaacaaatttatagagatacttacgcttttg |
38996546 |
T |
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