View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1988_high_2 (Length: 615)

Name: NF1988_high_2
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1988_high_2
NF1988_high_2
[»] chr7 (19 HSPs)
chr7 (269-529)||(43245317-43245576)
chr7 (20-145)||(36631775-36631904)
chr7 (20-143)||(8395083-8395210)
chr7 (16-143)||(34468415-34468546)
chr7 (20-145)||(5556421-5556550)
chr7 (24-145)||(3113201-3113326)
chr7 (20-145)||(7003585-7003714)
chr7 (20-145)||(7049456-7049585)
chr7 (24-142)||(43183551-43183673)
chr7 (24-145)||(8866810-8866935)
chr7 (24-145)||(26625707-26625832)
chr7 (24-145)||(38637461-38637586)
chr7 (24-143)||(37001320-37001443)
chr7 (20-142)||(14775677-14775803)
chr7 (20-142)||(15226130-15226256)
chr7 (78-144)||(33686553-33686619)
chr7 (86-142)||(36659189-36659245)
chr7 (564-600)||(43245289-43245325)
chr7 (72-119)||(11019694-11019741)
[»] chr2 (21 HSPs)
chr2 (20-145)||(2286866-2286988)
chr2 (14-145)||(771687-771822)
chr2 (20-142)||(17444117-17444243)
chr2 (20-145)||(16406088-16406217)
chr2 (24-145)||(42442948-42443073)
chr2 (20-142)||(41250714-41250840)
chr2 (20-145)||(18982503-18982632)
chr2 (20-145)||(32126267-32126396)
chr2 (22-145)||(31580815-31580942)
chr2 (22-145)||(35963651-35963777)
chr2 (24-143)||(8058424-8058547)
chr2 (24-143)||(45419545-45419668)
chr2 (20-142)||(6402885-6403011)
chr2 (20-145)||(26238573-26238703)
chr2 (77-143)||(26161814-26161880)
chr2 (15-142)||(7071611-7071742)
chr2 (63-145)||(4554381-4554464)
chr2 (95-145)||(26656286-26656336)
chr2 (109-145)||(17035840-17035876)
chr2 (109-145)||(17090348-17090384)
chr2 (96-143)||(12755937-12755984)
[»] chr6 (8 HSPs)
chr6 (20-145)||(34947905-34948034)
chr6 (22-142)||(13838760-13838884)
chr6 (14-145)||(29744222-29744358)
chr6 (20-145)||(33228430-33228560)
chr6 (20-142)||(399577-399703)
chr6 (24-143)||(28997692-28997815)
chr6 (20-145)||(31028033-31028163)
chr6 (20-106)||(34253091-34253179)
[»] chr1 (12 HSPs)
chr1 (20-145)||(23313953-23314082)
chr1 (20-142)||(17446252-17446378)
chr1 (29-145)||(7434390-7434510)
chr1 (20-145)||(11957437-11957566)
chr1 (20-143)||(32981139-32981266)
chr1 (20-145)||(15209367-15209497)
chr1 (20-143)||(42310019-42310149)
chr1 (73-145)||(3829968-3830040)
chr1 (22-118)||(33490340-33490441)
chr1 (74-145)||(35908573-35908644)
chr1 (20-142)||(41971337-41971464)
chr1 (20-54)||(3829942-3829976)
[»] chr5 (19 HSPs)
chr5 (16-145)||(16155846-16155979)
chr5 (20-145)||(19986403-19986532)
chr5 (20-145)||(10036866-10036995)
chr5 (22-145)||(13818938-13819065)
chr5 (22-145)||(39656606-39656733)
chr5 (24-145)||(16332979-16333104)
chr5 (20-142)||(36292702-36292828)
chr5 (31-145)||(1775457-1775575)
chr5 (24-142)||(17331078-17331200)
chr5 (30-142)||(39435669-39435785)
chr5 (24-143)||(12277936-12278059)
chr5 (20-142)||(26282399-26282525)
chr5 (24-143)||(31681329-31681452)
chr5 (24-143)||(33431283-33431406)
chr5 (24-143)||(28801837-28801961)
chr5 (20-145)||(36292313-36292444)
chr5 (72-142)||(43069861-43069931)
chr5 (72-145)||(37255647-37255720)
chr5 (20-145)||(31500799-31500925)
[»] chr4 (39 HSPs)
chr4 (24-145)||(40530048-40530173)
chr4 (20-142)||(25931713-25931839)
chr4 (20-145)||(44157583-44157712)
chr4 (20-145)||(13390526-13390655)
chr4 (20-145)||(36381428-36381556)
chr4 (20-144)||(17510319-17510447)
chr4 (24-144)||(28876394-28876518)
chr4 (24-143)||(33135525-33135648)
chr4 (20-145)||(30076730-30076860)
chr4 (15-142)||(50204169-50204300)
chr4 (16-145)||(10351975-10352109)
chr4 (23-145)||(13398639-13398765)
chr4 (24-143)||(35546914-35547037)
chr4 (22-145)||(37577711-37577838)
chr4 (24-145)||(30215825-30215950)
chr4 (24-145)||(42332852-42332977)
chr4 (24-145)||(43142664-43142789)
chr4 (24-143)||(3291978-3292101)
chr4 (20-142)||(13013148-13013274)
chr4 (20-142)||(26438360-26438486)
chr4 (20-142)||(47501733-47501859)
chr4 (24-143)||(6689318-6689441)
chr4 (20-145)||(1818614-1818743)
chr4 (24-145)||(7769525-7769644)
chr4 (64-145)||(29319432-29319513)
chr4 (20-142)||(34406365-34406491)
chr4 (20-142)||(43356864-43356990)
chr4 (73-145)||(26449709-26449781)
chr4 (25-143)||(29995089-29995206)
chr4 (29-142)||(20130197-20130314)
chr4 (80-145)||(6236482-6236547)
chr4 (32-142)||(30110931-30111046)
chr4 (73-130)||(48990287-48990344)
chr4 (20-55)||(48130938-48130973)
chr4 (72-145)||(48131027-48131099)
chr4 (20-54)||(26449683-26449717)
chr4 (20-54)||(48990261-48990295)
chr4 (95-143)||(25182827-25182874)
chr4 (97-145)||(42843892-42843940)
[»] chr3 (17 HSPs)
chr3 (20-138)||(34083207-34083329)
chr3 (20-145)||(40080820-40080949)
chr3 (20-142)||(19391106-19391231)
chr3 (20-142)||(6268503-6268629)
chr3 (20-140)||(22967527-22967651)
chr3 (24-143)||(6929975-6930098)
chr3 (24-143)||(45183943-45184066)
chr3 (21-143)||(35514956-35515082)
chr3 (20-142)||(39772750-39772876)
chr3 (24-145)||(11017349-11017474)
chr3 (24-145)||(19564595-19564721)
chr3 (72-142)||(1185591-1185661)
chr3 (83-144)||(27936177-27936238)
chr3 (22-123)||(45336818-45336924)
chr3 (75-142)||(5136311-5136377)
chr3 (24-105)||(33041913-33041998)
chr3 (95-145)||(43137306-43137356)
[»] chr8 (19 HSPs)
chr8 (24-145)||(29727463-29727588)
chr8 (20-142)||(15839232-15839362)
chr8 (24-145)||(34135884-34136009)
chr8 (24-139)||(3647876-3647995)
chr8 (20-145)||(36409443-36409572)
chr8 (20-142)||(24019472-24019598)
chr8 (20-142)||(28524158-28524284)
chr8 (20-142)||(39915474-39915600)
chr8 (20-145)||(40469946-40470076)
chr8 (14-143)||(4404961-4405094)
chr8 (73-142)||(42231922-42231991)
chr8 (24-145)||(16787104-16787229)
chr8 (22-145)||(7278987-7279115)
chr8 (24-142)||(23403031-23403153)
chr8 (72-142)||(3436249-3436319)
chr8 (86-145)||(27046841-27046900)
chr8 (20-88)||(9878179-9878251)
chr8 (83-142)||(29632413-29632472)
chr8 (17-54)||(2727993-2728030)
[»] scaffold0069 (1 HSPs)
scaffold0069 (23-142)||(18522-18644)
[»] scaffold0002 (1 HSPs)
scaffold0002 (20-142)||(479538-479664)
[»] scaffold0154 (1 HSPs)
scaffold0154 (20-145)||(32174-32303)


Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-135; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 269 - 529
Target Start/End: Complemental strand, 43245576 - 43245317
Alignment:
Q  269 gggtagatatcaacaagtgtttcttggtagaataacattaaggagctgtatgtagtaggtgtgagaaagtgtgtaactcctttattcataagtgctaatt 368  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43245576 gggtagatatcaacaagtgtttct-ggtagaataacattaaggagctgtatgtagtaggtgtgagaaagtgtgtaactcctttattcataagtgctaatt 43245478  T
Q  369 tgaccattattgcttgagtttcttcactgcccacaacatgtagtggagggttggaagctgataaagattatttcagatacgtaacgactatgaaaagcct 468  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43245477 tgaccattattgcttgagtttcttcactacccacaacatgtagtggagggttggaagctgataaagattatttcagatacgtaacgactatgaaaagcct 43245378  T
Q  469 attagagatgttccaaaatgacatgcacgtatttgcatggacagaattccaagttaaaaat 529  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  43245377 attagagatgttccaaaatgacatgcacatatttgcatggacagaattccaagttaaaaat 43245317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 36631775 - 36631904
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  36631775 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgcacttttgt 36631874  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  36631875 tgacaaaatgataaacctcttttatttcga 36631904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 8395083 - 8395210
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    |||  |||||||||||||||||||||| ||||||||||||||| |||||||    
T  8395083 tcagaatacatgttatttaattacatggtcaattttcagacttcacgtatattgcgtggtcaatttcaattaataaacctattttaaattgcacttttgt 8395182  T
Q  116 tgacaaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||||||    
T  8395183 tgacaaaatgataaacctcttttatttc 8395210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 16 - 143
Target Start/End: Complemental strand, 34468546 - 34468415
Alignment:
Q  16 atgatcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgctt 111  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||| ||||||||||||||||| ||||||||||||||  |||    
T  34468546 atgatcagaatacatgttatttaattacaaggtcaattttcagacttcacgtatattacgtgatcaatttcaattaataaccctattttaaattgtactt 34468447  T
Q  112 ttgttgacaaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||||||||||    
T  34468446 ttgttgacaaaatgataaacctcttttatttc 34468415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 5556421 - 5556550
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  5556421 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgtacttttgt 5556520  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||| |||||||||||    
T  5556521 tgacaaaatgataaacctattttatttcga 5556550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 3113326 - 3113201
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||| |||||| |||||||||||| ||||||    ||| |||| |||||||||||||||||| ||||||||||||||  |||||||||||    
T  3113326 aatacatgttatttgattacagggtcaattttcagacttcacgtatattacgttgtcaatttcaattaataaccctattttaaattgtacttttgttgac 3113227  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||    
T  3113226 aaaatgataaacctcttttatttcga 3113201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 7003585 - 7003714
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||| |||||||||||||| | |||||||||||| ||||||    ||| || |||||||||||||||||||||| ||||||||||||  |||||||    
T  7003585 tcagaatatatgttatttaattatagggtcaattttcagacttcacgtatattacatggtcaatttcaattaataatcatattttaaattgtacttttgt 7003684  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  7003685 tgacaaaatgataaacctcttttatttcga 7003714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 7049456 - 7049585
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||| |||||||||||||| | |||||||||||| ||||||    ||| || |||||||||||||||||||||| ||||||||||||  |||||||    
T  7049456 tcagaatatatgttatttaattatagggtcaattttcagacttcacgtatattacatggtcaatttcaattaataatcatattttaaattgtacttttgt 7049555  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  7049556 tgacaaaatgataaacctcttttatttcga 7049585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 43183673 - 43183551
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||||||||||||| ||||||||| ||||||    ||| || |||||||||| ||||||||||||||||||||||||   |||| |||||    
T  43183673 aatacatgttatttaattacatggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtagttttattgac 43183574  T
Q  120 aaaatgataaacctcttttattt 142  Q
    |||||||||||||||||||||||    
T  43183573 aaaatgataaacctcttttattt 43183551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 8866935 - 8866810
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||||||||||  | ||||||||| ||||||    ||| ||||||||||||| ||||||||||| ||||||||||||  ||||| |||||    
T  8866935 aatacatgttatttaattacagagccaattttcagacttcacatatattacgtggtcaattttaattaataatcttattttaaattgtacttttattgac 8866836  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||    
T  8866835 aaaatgataaacctcttttatttcga 8866810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 26625707 - 26625832
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| ||||||||||||||||| ||||||  ||||| |||||    
T  26625707 aatacatgttatttaattacagggccaattttcagacttcacatatattacatggtcaattttaattaataatcctatttgaaattgtacttttattgac 26625806  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||    
T  26625807 aaaatgataaacctcttttatttcga 26625832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 38637586 - 38637461
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| | ||||||||||||||||||||||  ||||| |||||    
T  38637586 aatacatgttatttaattacagggccaattttcagacttcacatatattacatggtcaattttatttaataatcctattttaaattgtacttttattgac 38637487  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||    
T  38637486 aaaatgataaacctcttttatttcga 38637461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 37001443 - 37001320
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| |  | |||||||| ||||||||||||||||||||||||  ||||| |||||    
T  37001443 aatacatgttatttaattacagggccaattttcagacttcacatatattatattgtcaattttaattaataatcctattttaaattgtacttttattgac 37001344  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  37001343 aaaatgataaacctcttttatttc 37001320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 14775803 - 14775677
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    ||| ||||| | ||||||||||||||| ||||||||||||||  |||||||    
T  14775803 tcagaatgcatgttatttaattacaggatcaattttcagacttcacgtatattacgtgattaatttcaattaataaccctattttaaattgtacttttgt 14775704  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  14775703 tgataaaatgataaacttcatttattt 14775677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 15226256 - 15226130
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||| ||||||||||||||||| | |||||||||| ||||||    ||| ||||| | ||||||||||||||| ||||||||||||||  |||||||    
T  15226256 tcagaatgcatgttatttaattacaggatcaattttcagacttcacgtatattacgtgattaatttcaattaataaccctattttaaattgtacttttgt 15226157  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  15226156 tgataaaatgataaacttcatttattt 15226130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 78 - 144
Target Start/End: Original strand, 33686553 - 33686619
Alignment:
Q  78 atttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcg 144  Q
    |||||||||||||| | ||||||||||||  ||||||||||||||||||||||||| ||||||||||    
T  33686553 atttcaattaataaccatattttaaattgtacttttgttgacaaaatgataaacctattttatttcg 33686619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 36659189 - 36659245
Alignment:
Q  86 taataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttattt 142  Q
    |||||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  36659189 taataatcctattttaaattgtacttttattgacaaaatgataaacctcttttattt 36659245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 564 - 600
Target Start/End: Complemental strand, 43245325 - 43245289
Alignment:
Q  564 gttaaaaattaaaagccaagctttttgtcgttgtttt 600  Q
    |||||||||||||||||||||||||||||||||||||    
T  43245325 gttaaaaattaaaagccaagctttttgtcgttgtttt 43245289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 11019741 - 11019694
Alignment:
Q  72 tggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||||||||| ||||||||||||||  |||||||||||    
T  11019741 tggtcaatttcaattaataaccctattttaaattgtacttttgttgac 11019694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 9e-47; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 2286866 - 2286988
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttcatatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |   |||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  2286866 tcagaatacatgttatttaattacagggtcaattttcatacttcaca---cgtggtcaatttcaattaataaccctattttaaattgcacttttgttgac 2286962  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||    
T  2286963 aaaatgataaacctcttttatttcga 2286988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 771687 - 771822
Alignment:
Q  14 atatgatcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgc 109  Q
    ||||| |||||||||||||||||||||||||||||||||||||  ||||||    ||| || |||||||||||||||||||| ||||||||||||||       
T  771687 atatggtcagaatacatgttatttaattacatggtcaattttccgacttcacttatattacatggtcaatttcaattaataaccctattttaaattgtat 771786  T
Q  110 ttttgttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||||||||    
T  771787 ttttgttgacaaaatgataaacctcttttatttcga 771822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 17444243 - 17444117
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  17444243 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgtacttttgt 17444144  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||||||||||||||    
T  17444143 tgataaaatgataaacctcttttattt 17444117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 16406088 - 16406217
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||    ||| || |||||||||||||||||||| ||||||||||||||  |||||||    
T  16406088 tcagaatacatgttatttaattacatggtgaattttcagacttcacgtatattacatggtcaatttcaattaataaccctattttaaattgtacttttgt 16406187  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    | ||||||||||||||||||||||||||||    
T  16406188 taacaaaatgataaacctcttttatttcga 16406217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 42442948 - 42443073
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||||||||||||||| ||||||| ||||||    ||| || |||||||||||||||||||| ||||||||||||||  |||||||||||    
T  42442948 aatacatgttatttaattacatggtccattttcagacttcacgtatattacatggtcaatttcaattaataaccctattttaaattgtacttttgttgac 42443047  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||    
T  42443048 aaaatgataaacctcttttatttcga 42443073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 41250840 - 41250714
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    ||| ||||||| ||||||||||||||| ||||||||||||||| |||||||    
T  41250840 tcagaatacatgttatttaattacatggtcaattttcagacttcacgtatattacgtggttaatttcaattaataaccctattttaaattgcacttttgt 41250741  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  41250740 tgataaaatgataaacttcatttattt 41250714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 18982503 - 18982632
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||    ||| ||||||| ||||||||||||||| | ||||||||||||  |||||||    
T  18982503 tcagaatacatgttatttaattacagggtaaattttcagacttcacgtatattacgtggtaaatttcaattaataaccatattttaaattgtacttttgt 18982602  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  18982603 tgacaaaatgataaacctcttttatttcga 18982632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 32126396 - 32126267
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||  |||||||||||| ||||||    ||| ||||| ||||||||||||||||| ||||||||||| ||  |||||||    
T  32126396 tcagaatacatgttatttaattacggggtcaattttcagacttcacgtatattacgtgatcaatttcaattaataaccctattttaaactgtacttttgt 32126297  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||| ||||||||||||||    
T  32126296 tgacaaaatgataaatctcttttatttcga 32126267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 31580942 - 31580815
Alignment:
Q  22 agaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttg 117  Q
    ||||||||||||||||||||||| || ||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||   ||||||||    
T  31580942 agaatacatgttatttaattacagggacaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgtatttttgttg 31580843  T
Q  118 acaaaatgataaacctcttttatttcga 145  Q
    || |||||||||||||| ||||||||||    
T  31580842 acgaaatgataaacctcctttatttcga 31580815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 35963651 - 35963777
Alignment:
Q  22 agaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttg 117  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    ||| |||| |||||||||||||||||| |||||||||| |||  |||||||||    
T  35963651 agaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgttgtcaatttcaattaataaccctattttaagttgtacttttgttg 35963750  T
Q  118 acaaaatgataaacctcttttatttcga 145  Q
    |||||||||| |||||||||||||||||    
T  35963751 acaaaatgat-aacctcttttatttcga 35963777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 8058547 - 8058424
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| |  ||||||||| ||||||    ||| || || ||||||||||||||||||||||||||||||||  || ||||||||    
T  8058547 aatacatgttatttaattacaagaccaattttcagacttcacatatattacatgatcaatttcaattaataatcctattttaaattgtactattgttgac 8058448  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  8058447 aaaatgataaacctcttttatttc 8058424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 45419545 - 45419668
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||||||||||||| ||||||| | ||||||    ||| || |||||||||| ||||||||||||||||||||||||   |||| |||||    
T  45419545 aatacatgttatttaattacatggccaatttttagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtagttttattgac 45419644  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  45419645 aaaatgataaacctcttttatttc 45419668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 6403011 - 6402885
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  6403011 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtacttttgt 6402912  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  6402911 tgataaaatgataaacttcatttattt 6402885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 26238573 - 26238703
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaa-ttttcatacttc----atatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttg 114  Q
    ||||||||||||||||||||||| |||||||| |||||| |||||    |||| || |||||||||||||||||||| ||||||||||||||  |||||     
T  26238573 tcagaatacatgttatttaattatatggtcaaattttcaaacttcgtgtatattacatggtcaatttcaattaataaccctattttaaattgtacttttc 26238672  T
Q  115 ttgacaaaatgataaacctcttttatttcga 145  Q
    ||||| ||||||  |||||||||||||||||    
T  26238673 ttgacgaaatgaggaacctcttttatttcga 26238703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 26161880 - 26161814
Alignment:
Q  77 aatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttc 143  Q
    ||||||||||||||| ||||||||||||||  ||||| ||||||||||||||||||| |||||||||    
T  26161880 aatttcaattaataaccctattttaaattgtacttttattgacaaaatgataaacctattttatttc 26161814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 7071742 - 7071611
Alignment:
Q  15 tatgatcagaatacatgttatttaattacatggtcaatttt-catacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgc 109  Q
    |||| ||||||||||||||||||||||| | |||||||||| || ||||||    ||| |  ||||||||||||||||||||   ||||||||||||  |    
T  7071742 tatgttcagaatacatgttatttaattatagggtcaatttttcagacttcacgtatattaa-tggtcaatttcaattaataaatttattttaaattgtac 7071644  T
Q  110 ttttgttgacaaaatgataaacctcttttattt 142  Q
    || ||||||||||||||  ||||||||||||||    
T  7071643 ttctgttgacaaaatgaggaacctcttttattt 7071611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 4554464 - 4554381
Alignment:
Q  63 catatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacc-tcttttatttcga 145  Q
    ||||| || |||||||||||||||||||| | ||||||||||||   ||||||||||||||||| ||||| | |||||||||||    
T  4554464 catattacatggtcaatttcaattaataaccatattttaaattgtatttttgttgacaaaatgagaaaccttattttatttcga 4554381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 26656336 - 26656286
Alignment:
Q  95 tattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||  |||||||||||||||||| | ||||||||||||||||    
T  26656336 tattttaaattgtacttttgttgacaaaatgacatacctcttttatttcga 26656286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 17035876 - 17035840
Alignment:
Q  109 cttttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||| ||||||||||||||||||    
T  17035876 cttttgttgacaaaatgagaaacctcttttatttcga 17035840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 109 - 145
Target Start/End: Complemental strand, 17090384 - 17090348
Alignment:
Q  109 cttttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||| ||||||||||||||||||    
T  17090384 cttttgttgacaaaatgagaaacctcttttatttcga 17090348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 143
Target Start/End: Complemental strand, 12755984 - 12755937
Alignment:
Q  96 attttaaattgcgcttttgttgacaaaatgataaacctcttttatttc 143  Q
    |||||||||||   |||| |||||||||||||||||||||||||||||    
T  12755984 attttaaattgtagttttattgacaaaatgataaacctcttttatttc 12755937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 34948034 - 34947905
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  34948034 tcagaatacatgttatttaattacatggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgtacttttgt 34947935  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  34947934 tgacaaaatgataaacctcttttatttcga 34947905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 22 - 142
Target Start/End: Original strand, 13838760 - 13838884
Alignment:
Q  22 agaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttg 117  Q
    |||||||||||||||||||||||||||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||   ||||||||    
T  13838760 agaatacatgttatttaattacatggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgtatttttgttg 13838859  T
Q  118 acaaaatgataaacctcttttattt 142  Q
    | ||||||||||| |||||||||||    
T  13838860 ataaaatgataaatctcttttattt 13838884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 29744222 - 29744358
Alignment:
Q  14 atatgatcagaatacatgttatttaatt-acatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcg 108  Q
    ||||| ||||||||||||| |||||||| ||| |||||||||||| ||||||    ||| || |||||||| ||||||||||| ||||||||||||||      
T  29744222 atatggtcagaatacatgtgatttaatttacaaggtcaattttcagacttcacgtatattacatggtcaatctcaattaataaccctattttaaattgta 29744321  T
Q  109 cttttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||||||||||||||||||||||    
T  29744322 cttttgttgacaaaatgataaacctcttttatttcga 29744358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 33228560 - 33228430
Alignment:
Q  20 tcagaatacatgttatttaatt-acatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttg 114  Q
    ||||||||||||| |||||||| ||| |||||||||||| ||||||    ||| || |||||||||||||||||||| ||||||||||||||  ||||||    
T  33228560 tcagaatacatgtgatttaatttacaaggtcaattttcagacttcacgtatattacatggtcaatttcaattaataaccctattttaaattgtacttttg 33228461  T
Q  115 ttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||| |||||||||||||    
T  33228460 ttgacaaaatgataaacatcttttatttcga 33228430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 399577 - 399703
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  399577 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtacttttgt 399676  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  399677 tgataaaatgataaacttcatttattt 399703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 28997692 - 28997815
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| |||||||||||||||||||||||    |||| |||||    
T  28997692 aatacatgttatttaattacagggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattatagttttattgac 28997791  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  28997792 aaaatgataaacctcttttatttc 28997815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 31028163 - 31028033
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaatttt-catacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttg 114  Q
    ||||||||||| |||||||||||||  ||| ||||| || ||||||    ||| || |||||||||||||||||||  | ||||||||||||  ||||||    
T  31028163 tcagaatacatattatttaattacagcgtcgatttttcagacttcacgtatattacatggtcaatttcaattaatagccatattttaaattgtacttttg 31028064  T
Q  115 ttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||| |  |||||||||||||||||    
T  31028063 ttgacaaaataaggaacctcttttatttcga 31028033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 106
Target Start/End: Original strand, 34253091 - 34253179
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattg 106  Q
    ||||||||||||||  ||| ||| |||||||||||||| ||||||    ||| ||||| | ||||||||||||||| ||||||||||||||    
T  34253091 tcagaatacatgtt--ttatttaaatggtcaattttcagacttcacgtatattacgtgattaatttcaattaataaccctattttaaattg 34253179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 23313953 - 23314082
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  23313953 tcagaatacatgttatttaattacatggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgtacttttgt 23314052  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  23314053 tgacaaaatgataaacctcttttatttcga 23314082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 17446252 - 17446378
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||    ||| || |||||||||||||||||||||||||||||||||||| |||||||    
T  17446252 tcagaatacatgttatttaattacatggccaattttcagacttcacgtatattacatggtcaatttcaattaataatcctattttaaattgcacttttgt 17446351  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    |||||||||||||||||||||||||||    
T  17446352 tgacaaaatgataaacctcttttattt 17446378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 29 - 145
Target Start/End: Original strand, 7434390 - 7434510
Alignment:
Q  29 atgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaat 124  Q
    ||||||||||||||||||||||||||||| ||||||    ||| |||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  7434390 atgttatttaattacatggtcaattttcagacttcacgtatattacgttgtcaatttcaattaataaccctattttaaattgcacttttgttgacaaaat 7434489  T
Q  125 gataaacctcttttatttcga 145  Q
    |||||||||||||||||||||    
T  7434490 gataaacctcttttatttcga 7434510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 11957566 - 11957437
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||||||||||||||||| || ||| |||||||| ||||||    ||| || |||||||||||||||||||||||||||||||||||  |||||||    
T  11957566 tcagaatacatgttatttaattgcagggttaattttcagacttcacatatattacatggtcaatttcaattaataatcctattttaaattgtacttttgt 11957467  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  11957466 tgacaaaatgataaacctcttttatttcga 11957437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 32981266 - 32981139
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||||||||||||||||||||||||||||||||| || |||    ||| | | ||||||||||||||||||| ||||||||||||||  |||||||    
T  32981266 tcagaatacatgttatttaattacatggtcaattttcagacatcacgtatattaggcggtcaatttcaattaataaccctattttaaattgtacttttgt 32981167  T
Q  116 tgacaaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||||||    
T  32981166 tgacaaaatgataaacctcttttatttc 32981139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 15209497 - 15209367
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaatttt-catacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttg 114  Q
    ||||||||||||||||||||||||| |||||||||| || ||||||    ||| || |||||||||||||||||||| ||||||||||||||  ||||||    
T  15209497 tcagaatacatgttatttaattacagggtcaatttttcagacttcacgtatattacatggtcaatttcaattaataaccctattttaaattgtacttttg 15209398  T
Q  115 ttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||| |||||||||||||||||    
T  15209397 ttgacaaaatgatgaacctcttttatttcga 15209367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 42310149 - 42310019
Alignment:
Q  20 tcagaatacatgttatttaattacat---ggtcaattttcatacttcat----atgacgtggtcaatttcaattaataatcctattttaaattgcgcttt 112  Q
    |||||||||||||||||||||||||    |||||||||||| |||||||    || ||||||||||||||||||||||||| ||||||||||||  ||||    
T  42310149 tcagaatacatgttatttaattacagcagggtcaattttcagacttcatgtatattacgtggtcaatttcaattaataatcatattttaaattgtacttt 42310050  T
Q  113 tgttgacaaaatgataaacctcttttatttc 143  Q
    |||| |||||||||||||| |||||||||||    
T  42310049 tgtttacaaaatgataaacatcttttatttc 42310019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 3829968 - 3830040
Alignment:
Q  73 ggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||| ||||||||||||||  |||||||||||||||| |||||||| |||||||||||    
T  3829968 ggtcaatttcaattaataaccctattttaaattgtacttttgttgacaaaattataaacctattttatttcga 3830040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 33490340 - 33490441
Alignment:
Q  22 agaatacatgttatttaattacatggtcaatttt-catacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgtt 116  Q
    |||||||||||||||||||||||||| ||||||| |||||||||    ||| || |||||||||||||||||||| ||||||||||||||  ||||||||    
T  33490340 agaatacatgttatttaattacatgggcaatttttcatacttcacgtatattacatggtcaatttcaattaataaccctattttaaattgtacttttgtt 33490439  T
Q  117 ga 118  Q
    ||    
T  33490440 ga 33490441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 35908573 - 35908644
Alignment:
Q  74 gtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||| ||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||    
T  35908573 gtcaattttaattaataatcctattttaaattgtatttttattgacaaaatgataaacctcttttatttcga 35908644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 41971464 - 41971337
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaatttt-catacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttg 114  Q
    ||||||||||||||||||||||||| |||||||||| ||  |||||    ||| |  ||||||||||||||||| || ||||||||||||||  ||||||    
T  41971464 tcagaatacatgttatttaattacagggtcaatttttcaggcttcacgtatattatatggtcaatttcaattaacaaccctattttaaattgtacttttg 41971365  T
Q  115 ttgacaaaatgataaacctcttttattt 142  Q
    ||| ||||| ||  ||||||||||||||    
T  41971364 ttgtcaaaacgaggaacctcttttattt 41971337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 3829942 - 3829976
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattt 54  Q
    ||||||||||||||||||||||||| |||||||||    
T  3829942 tcagaatacatgttatttaattacagggtcaattt 3829976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 145
Target Start/End: Original strand, 16155846 - 16155979
Alignment:
Q  16 atgatcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgctt 111  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||    ||| | ||||||||||||||||||||| ||||||||||||||  |||    
T  16155846 atgatcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattatgtggtcaatttcaattaataaccctattttaaattgtactt 16155945  T
Q  112 ttgttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||||||    
T  16155946 ttgttgacaaaatgataaacctcttttatttcga 16155979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 19986403 - 19986532
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||||||||||||||||||||||||||  | |||||    
T  19986403 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataatcctattttaaattgtacgtttgt 19986502  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  19986503 tgacaaaatgataaacctcttttatttcga 19986532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 10036866 - 10036995
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttcatatg----acgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| ||| |||||||| |||||| |||    ||||||||||||||||||||||| ||||||||||||||  |||||||    
T  10036866 tcagaatacatgttatttaattacagggtgaattttcagacttcacatgtattacgtggtcaatttcaattaataaccctattttaaattgtacttttgt 10036965  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  10036966 tgacaaaatgataaacctcttttatttcga 10036995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 13818938 - 13819065
Alignment:
Q  22 agaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttg 117  Q
    |||||||||||||||||||||||||||||||||| | ||||||    ||| |||| |||||||||||||||||| ||||||||||||||  |||||||||    
T  13818938 agaatacatgttatttaattacatggtcaatttttagacttcacgtatattacgtagtcaatttcaattaataaccctattttaaattgtacttttgttg 13819037  T
Q  118 acaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||    
T  13819038 acaaaatgataaacctcttttatttcga 13819065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 145
Target Start/End: Complemental strand, 39656733 - 39656606
Alignment:
Q  22 agaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttg 117  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||   ||||||||    
T  39656733 agaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgtatttttgttg 39656634  T
Q  118 acaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||    
T  39656633 acaaaatgataaacctcttttatttcga 39656606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 16333104 - 16332979
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||   ||||||||||    
T  16333104 aatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgtaattttgttgac 16333005  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||    
T  16333004 aaaatgataaacctcttttatttcga 16332979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 36292828 - 36292702
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||||||||||||| ||||||||||||||  |||||||    
T  36292828 tcagaatacatgttatttaattacagggtcaattttcagacttcaagtatattacgtggttaatttcaattaataaccctattttaaattgtacttttgt 36292729  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||||||||||||||    
T  36292728 tgataaaatgataaacctcttttattt 36292702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 1775575 - 1775457
Alignment:
Q  31 gttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatga 126  Q
    |||||||||||||| | |||||||||| ||||||    ||| ||||||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||    
T  1775575 gttatttaattacaggttcaattttcagacttcacgtatattacgtggtcaatttcaatcaataaccatattttaaattgcacttttgttgacaaaatga 1775476  T
Q  127 taaacctcttttatttcga 145  Q
    |||||||||||||||||||    
T  1775475 taaacctcttttatttcga 1775457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 24 - 142
Target Start/End: Complemental strand, 17331200 - 17331078
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||||||||||  ||||||||||| ||||||    ||| || |||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  17331200 aatacatgttatttaattacagagtcaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtacttttattgac 17331101  T
Q  120 aaaatgataaacctcttttattt 142  Q
    |||||||||||||||||||||||    
T  17331100 aaaatgataaacctcttttattt 17331078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 39435669 - 39435785
Alignment:
Q  30 tgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatg 125  Q
    ||||||||||||||| || ||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||  |||||||||| ||||||    
T  39435669 tgttatttaattacagggacaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgtacttttgttgataaaatg 39435768  T
Q  126 ataaacctcttttattt 142  Q
    |||||||||||||||||    
T  39435769 ataaacctcttttattt 39435785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 12278059 - 12277936
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  12278059 aatacatgttatttaattacaaggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtacttttattgac 12277960  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    |||||||||| |||||||||||||    
T  12277959 aaaatgataatcctcttttatttc 12277936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 26282525 - 26282399
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  26282525 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtacttttgt 26282426  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  26282425 tgataaaatgataaacttcatttattt 26282399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 31681329 - 31681452
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| |||||||||||||||||||||||    |||| |||||    
T  31681329 aatacatgttatttaattacaaggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattatagttttattgac 31681428  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  31681429 aaaatgataaacctcttttatttc 31681452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 33431283 - 33431406
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| |||||||||||||||||||||||    |||| |||||    
T  33431283 aatacatgttatttaattacaaggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattatagttttattgac 33431382  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  33431383 aaaatgataaacctcttttatttc 33431406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 28801837 - 28801961
Alignment:
Q  24 aatacatgttatttaattacatggtcaatttt-catacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttga 118  Q
    ||||||||||||||||||||| |||||||||| || ||||||    ||| ||||| |||||||||||||| || ||||||||||||||  ||||||||||    
T  28801837 aatacatgttatttaattacaaggtcaatttttcagacttcacgtatattacgtgatcaatttcaattaaaaaccctattttaaattgtacttttgttga 28801936  T
Q  119 caaaatgataaacctcttttatttc 143  Q
    ||||||||  |||||||||||||||    
T  28801937 caaaatgaggaacctcttttatttc 28801961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 36292313 - 36292444
Alignment:
Q  20 tcagaatacatgttatttaatt-acatggtcaattttcatacttca----tatgacgt-ggtcaatttcaattaataatcctattttaaattgcgctttt 113  Q
    ||||||||||||| |||||||| ||| |||||||||||| ||||||    ||| || | ||||||||||||||||||| | ||||||||||||  |||||    
T  36292313 tcagaatacatgtgatttaatttacagggtcaattttcaaacttcacgtatattacattggtcaatttcaattaataaccttattttaaattgtactttt 36292412  T
Q  114 gttgacaaaatgataaacctcttttatttcga 145  Q
    ||||| ||||||||||||||||||||||||||    
T  36292413 gttgataaaatgataaacctcttttatttcga 36292444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 43069861 - 43069931
Alignment:
Q  72 tggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttattt 142  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  43069861 tggtcaatttcaattaataaccctattttaaattgtacttttgttgactaaatgataaacctcttttattt 43069931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 37255647 - 37255720
Alignment:
Q  72 tggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||| ||||||||||||||||||||||||   |||| |||||||||||||||||||||||||||||||    
T  37255647 tggtcaattttaattaataatcctattttaaattgtatttttattgacaaaatgataaacctcttttatttcga 37255720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 31500925 - 31500799
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttc----atatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||| ||||||||||||||||||| || ||||||||| |||||    |||| || ||||||| |||||||||| ||||||||||||||||  |||   |    
T  31500925 tcagagtacatgttatttaattacagggccaattttcagacttcacgtatattacatggtcaacttcaattaattatcctattttaaattgtactt---t 31500829  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||| |||||| ||||    
T  31500828 tgacaaaatgataaacctattttatatcga 31500799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 40530048 - 40530173
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  40530048 aatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctattttaaattgcacttttgttgac 40530147  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||    
T  40530148 aaaatgataaacctcttttatttcga 40530173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 25931713 - 25931839
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttcat----atgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||    || ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  25931713 tcagaatacatgttatttaattacagggtcaattttcagacttcatgtatattacgtggtcaatttcaattaataaccctattttaaattgcacttttgt 25931812  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    | |||||||||||||||||||||||||    
T  25931813 taacaaaatgataaacctcttttattt 25931839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 44157583 - 44157712
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| || || ||||||||||||||||||||||||||||||||  |||||||    
T  44157583 tcagaatacatgttatttaattacagggtcaattttcagacttcacgcatattacatgatcaatttcaattaataatcctattttaaattgtacttttgt 44157682  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  44157683 tgacaaaatgataaacctcttttatttcga 44157712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 13390655 - 13390526
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||||||||||||||||||||||||||||  |||||||    
T  13390655 tcagaatacatgttatttaattacagggccaattttcaaacttcacgtatattacatggtcaatttcaattaataatcctattttaaattgtacttttgt 13390556  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||| ||||||||||||||||||||||||||    
T  13390555 tgataaaatgataaacctcttttatttcga 13390526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 36381556 - 36381428
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| | |||||||||| ||||||    ||| ||||||||||||| ||||||||| ||||||||||||||| |||||||    
T  36381556 tcagaatacatgttatttaattacaag-tcaattttcagacttcacgtatattacgtggtcaattttaattaataaccctattttaaattgcacttttgt 36381458  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||||    
T  36381457 tgacaaaatgataaacctcttttatttcga 36381428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 17510447 - 17510319
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||||||||||| | ||||||||||||  |||||||    
T  17510447 tcagaatacatattatttaattacaaggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccttattttaaattgtacttttgt 17510348  T
Q  116 tgacaaaatgataaacctcttttatttcg 144  Q
    |||||||||||||||||||||||||||||    
T  17510347 tgacaaaatgataaacctcttttatttcg 17510319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 28876518 - 28876394
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||| |||||||||||||||| |||||||||||| ||||||    ||| || |||||||||||||||||||||||||||||||||||  |||||||||||    
T  28876518 aatatatgttatttaattacaaggtcaattttcagacttcacgtatattacatggtcaatttcaattaataatcctattttaaattgtacttttgttgac 28876419  T
Q  120 aaaatgataaacctcttttatttcg 144  Q
    |||||||||||||||||||||||||    
T  28876418 aaaatgataaacctcttttatttcg 28876394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 33135648 - 33135525
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||||||||||||  ||||||||| ||||||    ||| || |||||||||||||||||||||||||||||||||||  |||||||||||    
T  33135648 aatacatgttatttaattacatgaccaattttcagacttcacatatattacatggtcaatttcaattaataatcctattttaaattgtacttttgttgac 33135549  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  33135548 aaaatgataaacctcttttatttc 33135525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 30076860 - 30076730
Alignment:
Q  20 tcagaatacatgttatttaatt-acatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttg 114  Q
    ||||||||||||| |||||||| ||| |||||||||||| ||||||    ||| || |||||||||||||||||||||||||||||||||||  ||||||    
T  30076860 tcagaatacatgtgatttaatttacaaggtcaattttcagacttcacgtatattacatggtcaatttcaattaataatcctattttaaattgtacttttg 30076761  T
Q  115 ttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||||||||||||||||    
T  30076760 ttgacaaaatgataaacctcttttatttcga 30076730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 50204300 - 50204169
Alignment:
Q  15 tatgatcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgct 110  Q
    |||| |||||| || ||||||||||||||| || ||||||||| ||||||    ||| || |||||||||||||||||||||||||||||||||||  ||    
T  50204300 tatggtcagaaaacctgttatttaattacagggccaattttcagacttcacgtatattacatggtcaatttcaattaataatcctattttaaattgtact 50204201  T
Q  111 tttgttgacaaaatgataaacctcttttattt 142  Q
    ||||||||||||||||||||||||||||||||    
T  50204200 tttgttgacaaaatgataaacctcttttattt 50204169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 145
Target Start/End: Complemental strand, 10352109 - 10351975
Alignment:
Q  16 atgatcagaatacatgttatttaatt-acatggtcaattttcatacttcat----atgacgtggtcaatttcaattaataatcctattttaaattgcgct 110  Q
    ||||||||||||||||  |||||||| ||| |||||||||||| |||||||    || || |||||||||||||||||||| ||||||||||||||  ||    
T  10352109 atgatcagaatacatgcgatttaatttacaaggtcaattttcagacttcatgtatattacatggtcaatttcaattaataaccctattttaaattgtact 10352010  T
Q  111 tttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||||||||||||||||||||    
T  10352009 tttgttgacaaaatgataaacctcttttatttcga 10351975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 13398765 - 13398639
Alignment:
Q  23 gaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttga 118  Q
    ||||||||||||||||||||||  | ||||||||| ||||||    ||| || ||||||||||||||| |||||||||||||||||||  ||||||||||    
T  13398765 gaatacatgttatttaattacagagccaattttcagacttcacgtatattacatggtcaatttcaattgataatcctattttaaattgtacttttgttga 13398666  T
Q  119 caaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||||||||||||    
T  13398665 caaaatgataaacctcttttatttcga 13398639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 35546914 - 35547037
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||||||||||||| ||||||||| ||||||    ||| || |||||||||| ||||||||||||||||||||||||   |||| |||||    
T  35546914 aatacatgttatttaattacatggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtagttttattgac 35547013  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  35547014 aaaatgataaacctcttttatttc 35547037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 37577711 - 37577838
Alignment:
Q  22 agaatacatgttatttaattacatggtcaattttcatacttcat----atgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttg 117  Q
    ||||||||||||||||||||||| ||| |||||||| |||||||    || || || |||||||||||||||||||||| |||||||||   ||||||||    
T  37577711 agaatacatgttatttaattacaaggttaattttcagacttcatgtatattacatgatcaatttcaattaataatcctaatttaaattgtatttttgttg 37577810  T
Q  118 acaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||    
T  37577811 acaaaatgataaacctcttttatttcga 37577838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 30215950 - 30215825
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| ||||||||||||||||| ||||||  ||||| |||||    
T  30215950 aatacatgttatttaattacaaggccaattttcagacttcacatatattacatggtcaattttaattaataatcctatttgaaattgtacttttattgac 30215851  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||    
T  30215850 aaaatgataaacctcttttatttcga 30215825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 42332977 - 42332852
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  42332977 aatacatgttatttaattacagggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtacttttattgac 42332878  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||| ||||||||||||||||||||||    
T  42332877 aaattgataaacctcttttatttcga 42332852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 43142789 - 43142664
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  43142789 aatacatgttatttaattacagggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtacttttattgac 43142690  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||| ||||||||||||||||||||||    
T  43142689 aaattgataaacctcttttatttcga 43142664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 3292101 - 3291978
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| ||||||||||||||||||||||||   |||| |||||    
T  3292101 aatacatgttatttaattacagggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtagttttattgac 3292002  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  3292001 aaaatgataaacctcttttatttc 3291978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 13013148 - 13013274
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  13013148 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtacttttgt 13013247  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  13013248 tgataaaatgataaacttcatttattt 13013274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 26438486 - 26438360
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  26438486 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtccttttgt 26438387  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  26438386 tgataaaatgataaacttcatttattt 26438360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 47501733 - 47501859
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  47501733 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtacttttgt 47501832  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  47501833 tgataaaatgataaacttcatttattt 47501859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 6689441 - 6689318
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| |||| |    ||| || |||||||||| ||||||||||||||||||||||||   |||| |||||    
T  6689441 aatacatgttatttaattacagggccaattttcagactttacatatattacatggtcaattttaattaataatcctattttaaattgtagttttattgac 6689342  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  6689341 aaaatgataaacctcttttatttc 6689318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 1818614 - 1818743
Alignment:
Q  20 tcagaatacatgttatttaat-tacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttg 114  Q
    ||||||||||||| |||| || |||| ||| |||||||| ||||||    ||| || |||||||||||||||||||| ||||||||||||||  ||||||    
T  1818614 tcagaatacatgtgattttatatacaaggttaattttcagacttcacgtatattacatggtcaatttcaattaataa-cctattttaaattgtacttttg 1818712  T
Q  115 ttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||||||||||||||||    
T  1818713 ttgacaaaatgataaacctcttttatttcga 1818743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 145
Target Start/End: Original strand, 7769525 - 7769644
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttcatatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaa 123  Q
    |||||||||||||||||||||||| |||||||   || | |||| || |||||||||| |||||||||| |||||||||||||  ||||| |||||||||    
T  7769525 aatacatgttatttaattacatggccaatttttc-acat-atattacatggtcaattttaattaataattctattttaaattgtacttttattgacaaaa 7769622  T
Q  124 tgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||    
T  7769623 tgataaacctcttttatttcga 7769644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 29319513 - 29319432
Alignment:
Q  64 atatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||| |||| |||||||||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  29319513 atattacgttgtcaatttcaattaataaccctattttaaattgtacttttgttgacaaaatgataaacctcttttatttcga 29319432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 34406491 - 34406365
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  34406491 tcagaatacatattatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtccttttgt 34406392  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  34406391 tgataaaatgataaacttcatttattt 34406365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 43356864 - 43356990
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||| ||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  43356864 tcagaatacatattatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtccttttgt 43356963  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  43356964 tgataaaatgataaacttcatttattt 43356990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 73 - 145
Target Start/End: Original strand, 26449709 - 26449781
Alignment:
Q  73 ggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| |||||||||||    
T  26449709 ggtcaatttcaattaataatcctattttacattgtacttttgttgacaaaatgataaacctattttatttcga 26449781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 143
Target Start/End: Complemental strand, 29995206 - 29995089
Alignment:
Q  25 atacatgttatttaatt-acatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||| |||||||| ||  |||||||||||| ||||||    ||| || ||||||||||||||||||||||||||||||||      ||||||||||    
T  29995206 atacatgtgatttaatttacggggtcaattttcagacttcacgtatattacatggtcaatttcaattaataatcctattttaaa------ttttgttgac 29995113  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  29995112 aaaatgataaacctcttttatttc 29995089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 142
Target Start/End: Original strand, 20130197 - 20130314
Alignment:
Q  29 atgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaat 124  Q
    |||| |||||| |||| |||||||||||| ||||||    ||| |||| || ||||| ||||||||| ||||||||||||||  |||||||||| |||||    
T  20130197 atgtcatttaactacagggtcaattttcagacttcacgtatattacgtagttaatttaaattaataaccctattttaaattgtacttttgttgataaaat 20130296  T
Q  125 gataaacctcttttattt 142  Q
    ||||||| || |||||||    
T  20130297 gataaacttcatttattt 20130314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 6236482 - 6236547
Alignment:
Q  80 ttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||| | ||||||||||||   ||||||||| ||||||||||||||||||||||||||    
T  6236482 ttcaattaataaccgtattttaaattgtatttttgttgataaaatgataaacctcttttatttcga 6236547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 30110931 - 30111046
Alignment:
Q  32 ttatttaattacatggtcaatttt-catacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatga 126  Q
    ||||||||||||| |||||||||| || ||||||    ||| || |||||||||||||| ||||| | ||||||||||||  |||||||||||||||| |    
T  30110931 ttatttaattacagggtcaatttttcagacttcacgtatattacatggtcaatttcaatcaataaccatattttaaattgtacttttgttgacaaaataa 30111030  T
Q  127 taaacctcttttattt 142  Q
      ||||| ||||||||    
T  30111031 agaacctattttattt 30111046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 48990287 - 48990344
Alignment:
Q  73 ggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaa 130  Q
    |||||||||||||||||||  |||||||||||||  ||||| ||||||||||||||||    
T  48990287 ggtcaatttcaattaataactctattttaaattgtacttttattgacaaaatgataaa 48990344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 20 - 55
Target Start/End: Original strand, 48130938 - 48130973
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaatttt 55  Q
    ||||||||||||||||||||||||||||||||||||    
T  48130938 tcagaatacatgttatttaattacatggtcaatttt 48130973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 48131027 - 48131099
Alignment:
Q  72 tggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||||| |||| |||||| ||  ||||||||||||||| ||  ||||| |||||||||||    
T  48131027 tggtcaatttcaattaataacccta-tttaaaatgtacttttgttgacaaaaggaggaaccttttttatttcga 48131099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 26449683 - 26449717
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattt 54  Q
    ||||||||||||||||||||||||| |||||||||    
T  26449683 tcagaatacatgttatttaattacagggtcaattt 26449717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 48990261 - 48990295
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattt 54  Q
    ||||||||||||||||||||||||| |||||||||    
T  48990261 tcagaatacatgttatttaattacagggtcaattt 48990295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 143
Target Start/End: Complemental strand, 25182874 - 25182827
Alignment:
Q  95 tattttaaattgcgcttttgttgacaaaatgataaacctcttttatttc 143  Q
    |||||||||||| |||||||||||||||||||  ||||| |||||||||    
T  25182874 tattttaaattgtgcttttgttgacaaaatgacgaacct-ttttatttc 25182827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 42843892 - 42843940
Alignment:
Q  97 ttttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||  |||||||||| |||||||  |||||||||||||||||    
T  42843892 ttttaaattgtacttttgttgaaaaaatgacgaacctcttttatttcga 42843940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 34083329 - 34083207
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| | ||||    ||| ||||||||||||||||||||||| ||||||||||||||| |||||||    
T  34083329 tcagaatacatgttatttaattacagggtcaattttcagagttcaagtatattacgtggtcaatttcaattaataaccctattttaaattgcacttttgt 34083230  T
Q  116 tgacaaaatgataaacctctttt 138  Q
    |||||||||||||||||||||||    
T  34083229 tgacaaaatgataaacctctttt 34083207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 40080949 - 40080820
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    |||||||| |||||||||||||| |||||||||||||| ||||||    ||| ||||||||||||||||||||||| | ||||||||||||  |||||||    
T  40080949 tcagaatatatgttatttaattatatggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccttattttaaattgtacttttgt 40080850  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||| |||||||||||    
T  40080849 tgacaaaatgataaaccttttttatttcga 40080820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 19391106 - 19391231
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||| ||||||| ||||||||||||||  |||||||    
T  19391106 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggtcaatttcagttaataa-cctattttaaattgtacttttgt 19391204  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||||||||||||||    
T  19391205 tgataaaatgataaacctcttttattt 19391231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 6268629 - 6268503
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||||||||||||| ||||||||||||||  |||||||    
T  6268629 tcagaatacatgttatttaattacaaggtcaattttcagacttcacgtatattacgtggttaatttcaattaataaccctattttaaattgtacttttgt 6268530  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  6268529 tgataaaatgataaacttcatttattt 6268503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 22967651 - 22967527
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||||||||||||| ||||||||||||||  |||||||    
T  22967651 tcagaatacatgttatttaattacagggtcaattttcaaacttcacgtatattacgtggttaatttcaattaataaccctattttaaattgtacttttgt 22967552  T
Q  116 tgacaaaatgataaacctcttttat 140  Q
    ||| |||||||||||| || |||||    
T  22967551 tgataaaatgataaacttcatttat 22967527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 6930098 - 6929975
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| |||||||||||| ||||||    ||| || |||| ||||| ||||||||||||||||||||||||   |||| |||||    
T  6930098 aatacatgttatttaattacagggtcaattttcagacttcacacatattacatggtaaattttaattaataatcctattttaaattgtagttttattgac 6929999  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  6929998 aaaatgataaacctcttttatttc 6929975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 24 - 143
Target Start/End: Original strand, 45183943 - 45184066
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||||||||| ||||||||||||||||||||||||   |||| |||||    
T  45183943 aatacatgttatttaattacagggccaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtagttttattgac 45184042  T
Q  120 aaaatgataaacctcttttatttc 143  Q
    ||||||||||||||||||||||||    
T  45184043 aaaatgataaacctcttttatttc 45184066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 21 - 143
Target Start/End: Original strand, 35514956 - 35515082
Alignment:
Q  21 cagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgtt 116  Q
    |||||||||||||||||||||||| ||| |||||||| ||||||    ||| || |||||||||||||||||||| ||||||||||||||   |||||||    
T  35514956 cagaatacatgttatttaattacagggtaaattttcagacttcacgtatattacatggtcaatttcaattaataaccctattttaaattgtatttttgtt 35515055  T
Q  117 gacaaaatgataaacctcttttatttc 143  Q
    || |||||||||||||| |||||||||    
T  35515056 gataaaatgataaaccttttttatttc 35515082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 39772750 - 39772876
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  39772750 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtccttttgt 39772849  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  39772850 tgataaaatgataaacttcatttattt 39772876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 11017474 - 11017349
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || ||||| |||| ||||||||||||||||||||||||  ||||| |||||    
T  11017474 aatacatgttatttaattacagggccaattttcagacttcacatatattacatggtcgattttaattaataatcctattttaaattgtacttttattgac 11017375  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||| ||||||||||||||||||||||    
T  11017374 aaattgataaacctcttttatttcga 11017349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 19564721 - 19564595
Alignment:
Q  24 aatacatgttatttaatt-acatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttga 118  Q
    ||||||||| |||||||| ||| |||||||||||| ||||||    ||| || |||||||||||||||||||| | ||||||| ||||  |||||| |||    
T  19564721 aatacatgtgatttaattcacaaggtcaattttcagacttcacgtatattacatggtcaatttcaattaataaccatattttacattgtacttttgatga 19564622  T
Q  119 caaaatgataaacctcttttatttcga 145  Q
    |||||||||||| || |||||||||||    
T  19564621 caaaatgataaatcttttttatttcga 19564595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 1185661 - 1185591
Alignment:
Q  72 tggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttattt 142  Q
    |||||||||||||||||||| ||||||||||||| | |||||||||||||||| |  ||||||||||||||    
T  1185661 tggtcaatttcaattaataaccctattttaaatttcacttttgttgacaaaataaggaacctcttttattt 1185591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 144
Target Start/End: Original strand, 27936177 - 27936238
Alignment:
Q  83 aattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcg 144  Q
    ||||||||| |||||||||||||   ||||||||||||||||||||||||| ||||||||||    
T  27936177 aattaataaccctattttaaattttacttttgttgacaaaatgataaacctattttatttcg 27936238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 45336818 - 45336924
Alignment:
Q  22 agaatacatgttatttaatt-acatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgtt 116  Q
    ||||||||||| |||||||| ||| ||| | |||||| ||||||    ||| || |||||||||||||||||||| ||||||||||||||  ||||||||    
T  45336818 agaatacatgtgatttaatttacaaggttacttttcagacttcacgtatattacatggtcaatttcaattaataaccctattttaaattgtacttttgtt 45336917  T
Q  117 gacaaaa 123  Q
    |||||||    
T  45336918 gacaaaa 45336924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 5136311 - 5136377
Alignment:
Q  75 tcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttattt 142  Q
    ||||||||||||||||||||||||||||||||   ||||||||||||| |||  ||||||||||||||    
T  5136311 tcaatttcaattaataatcctattttaaattgtatttttgttgacaaactga-gaacctcttttattt 5136377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 33041913 - 33041998
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaatt 105  Q
    ||||||||||||||||||||| || ||||||||| ||||||    ||| || | |||||||| ||||||||||||||||| |||||    
T  33041913 aatacatgttatttaattacagggccaattttcagacttcacatatattacatagtcaattttaattaataatcctatttaaaatt 33041998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 43137306 - 43137356
Alignment:
Q  95 tattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||   ||||||||| ||||||| ||||||||||||||||||    
T  43137306 tattttaaattgtatttttgttgaaaaaatgacaaacctcttttatttcga 43137356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 29727588 - 29727463
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||||||||||||||||||||  ||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  29727588 aatacatgttatttaattacaatgtcaattttcagacttcacatatattacgtggtcaatttcaattaataaccctattttaaattgtacttttgttgac 29727489  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    |||||||||||| |||||||||||||    
T  29727488 aaaatgataaacatcttttatttcga 29727463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 15839232 - 15839362
Alignment:
Q  20 tcagaatacatgttatttaatta----catggtcaattttcatactt----catatgacgtggtcaatttcaattaataatcctattttaaattgcgctt 111  Q
    |||||||||||||||||||||||    || |||||||||||| ||||     |||| ||||||||||||| ||||||||||||||||||||||||| |||    
T  15839232 tcagaatacatgttatttaattaattacagggtcaattttcagactttaagtatattacgtggtcaattttaattaataatcctattttaaattgcactt 15839331  T
Q  112 ttgttgacaaaatgataaacctcttttattt 142  Q
    |||||||||||||||||||||||||||||||    
T  15839332 ttgttgacaaaatgataaacctcttttattt 15839362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 34136009 - 34135884
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| |||||||||||| ||||||    ||| || |||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  34136009 aatacatgttatttaattacagggtcaattttcagacttcacatatattacatggtcaattttaattaataatcctattttaaattgtacttttattgac 34135910  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    |||||||||||| |||||||||||||    
T  34135909 aaaatgataaacatcttttatttcga 34135884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 24 - 139
Target Start/End: Complemental strand, 3647995 - 3647876
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttcat----atgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| ||| |||||||| |||||||    || | ||||||||||||||||||||| ||||||||||||||  |||||||||||    
T  3647995 aatacatgttatttaattacagggtaaattttcagacttcatgtatattatgtggtcaatttcaattaataaccctattttaaattgtacttttgttgac 3647896  T
Q  120 aaaatgataaacctctttta 139  Q
    ||||||||||||||||||||    
T  3647895 aaaatgataaacctctttta 3647876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 36409443 - 36409572
Alignment:
Q  20 tcagaatacatgttatttaatt-acatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttg 114  Q
    ||||||||||||| |||||||| ||| |||||||||||| ||||||    ||| || |||||||||||||||||||| ||||||||||||||  ||||||    
T  36409443 tcagaatacatgtgatttaatttacaaggtcaattttcagacttcacgtatattacatggtcaatttcaattaataa-cctattttaaattgtacttttg 36409541  T
Q  115 ttgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||||||||||||||||    
T  36409542 ttgacaaaatgataaacctcttttatttcga 36409572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 24019598 - 24019472
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  24019598 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtacttttgt 24019499  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  24019498 tgataaaatgataaacttcatttattt 24019472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 28524158 - 28524284
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  28524158 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtacttttgt 28524257  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  28524258 tgataaaatgataaacttcatttattt 28524284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 39915474 - 39915600
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  39915474 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtacttttgt 39915573  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  39915574 tgataaaatgataaacttcatttattt 39915600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 40470076 - 40469946
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttc-atacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttg 114  Q
    ||||||||||||||||||||||||| ||||||||||  | ||||||    ||| || |||||||||||||||||||| ||||||||||||||  ||||||    
T  40470076 tcagaatacatgttatttaattacagggtcaattttttagacttcacgtatattacatggtcaatttcaattaataaccctattttaaattgtacttttg 40469977  T
Q  115 ttgacaaaatgataaacctcttttatttcga 145  Q
    ||||||||||||  |||||||||||||||||    
T  40469976 ttgacaaaatgaggaacctcttttatttcga 40469946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 14 - 143
Target Start/End: Original strand, 4404961 - 4405094
Alignment:
Q  14 atatgatcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgc 109  Q
    ||||| ||| ||||||||||||||||||||| || ||||||||| ||||||    ||| || |||| ||||| ||||||||||| ||||||||||||  |    
T  4404961 atatggtcaaaatacatgttatttaattacagggccaattttcagacttcacatatattacatggttaattttaattaataatcttattttaaattgtac 4405060  T
Q  110 ttttgttgacaaaatgataaacctcttttatttc 143  Q
    |||| |||||||||||||||||||||||||||||    
T  4405061 ttttattgacaaaatgataaacctcttttatttc 4405094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 42231922 - 42231991
Alignment:
Q  73 ggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttattt 142  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||    
T  42231922 ggtcaatttcaattaataatcctattttaaattgtacttttgttgacaaaatgataaacctattttattt 42231991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 24 - 145
Target Start/End: Complemental strand, 16787229 - 16787104
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    ||||||||||||||||||||| |  ||||||| | ||||||    ||| || |||||||||| ||||||||| ||||||||||||||  ||||| |||||    
T  16787229 aatacatgttatttaattacaggaccaatttttagacttcacatatattacatggtcaattttaattaataagcctattttaaattgtacttttattgac 16787130  T
Q  120 aaaatgataaacctcttttatttcga 145  Q
    ||| ||||||||||||||||||||||    
T  16787129 aaattgataaacctcttttatttcga 16787104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 22 - 145
Target Start/End: Original strand, 7278987 - 7279115
Alignment:
Q  22 agaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttg 117  Q
    ||||||||||||||||||||||| || ||||||||| ||||||    ||| |  || ||||||||||||||||||| ||||||||||||  |||||||||    
T  7278987 agaatacatgttatttaattacagggccaattttcagacttcacgtatattatatgatcaatttcaattaataatcttattttaaattgtacttttgttg 7279086  T
Q  118 acaaaatgat-aaacctcttttatttcga 145  Q
    || ||||||| |||||| |||||||||||    
T  7279087 actaaatgataaaacctattttatttcga 7279115  T

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Target: chr8; HSP #14
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 23403031 - 23403153
Alignment:
Q  24 aatacatgttatttaattacatggtcaattttcatacttcatatg----acgtggtcaatttcaattaataatcctattttaaattgcgcttttgttgac 119  Q
    |||| |||||||||||||||| |  ||||||||| |||||| ||     || |||||||||| ||||||||||||||||||||||||  ||||| |||||    
T  23403031 aataaatgttatttaattacaggaccaattttcagacttcacatataatacatggtcaattttaattaataatcctattttaaattgtacttttattgac 23403130  T
Q  120 aaaatgataaacctcttttattt 142  Q
    |||||||||||||| ||||||||    
T  23403131 aaaatgataaacctattttattt 23403153  T

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Target: chr8; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 142
Target Start/End: Original strand, 3436249 - 3436319
Alignment:
Q  72 tggtcaatttcaattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttattt 142  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||  ||||| ||||||||    
T  3436249 tggtcaatttcaattaataaccctattttaaattgtacttttgttgacaaaatgaggaacctattttattt 3436319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 145
Target Start/End: Original strand, 27046841 - 27046900
Alignment:
Q  86 taataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttatttcga 145  Q
    |||||| ||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  27046841 taataaccctattttaaattgtacttctgttgacaaaatgataaacctcttttatttcga 27046900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 9878179 - 9878251
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttc----atatgacgtggtcaatttcaattaa 88  Q
    ||||||||||||||||||||||||| |||||||||||| |||||    |||| || |||||||||||||||||    
T  9878179 tcagaatacatgttatttaattacagggtcaattttcagacttcatgtatattacatggtcaatttcaattaa 9878251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 29632413 - 29632472
Alignment:
Q  83 aattaataatcctattttaaattgcgcttttgttgacaaaatgataaacctcttttattt 142  Q
    ||||||||| ||||||||||||||  |||||||||| |||||||||| | || |||||||    
T  29632413 aattaataaccctattttaaattgtacttttgttgataaaatgataagcttcatttattt 29632472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 2728030 - 2727993
Alignment:
Q  17 tgatcagaatacatgttatttaattacatggtcaattt 54  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  2728030 tgatcataatacatgttatttaattacagggtcaattt 2727993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 18522 - 18644
Alignment:
Q  23 gaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgttga 118  Q
    |||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||||||||||||||||||| ||||| ||||||||  ||||||||||    
T  18522 gaatacatgttatttaattaca-ggtcaattttcagacttcacgtatattacgtggtcaatttcaattaataaccctatattaaattgtacttttgttga 18620  T
Q  119 caaaatgataaacctcttttattt 142  Q
     |||||||||||||||||||||||    
T  18621 taaaatgataaacctcttttattt 18644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 66; Significance: 7e-29; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 20 - 142
Target Start/End: Complemental strand, 479664 - 479538
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||    ||| ||||||| ||||| ||||||||| ||||||||||||||  |||||||    
T  479664 tcagaatacatgttatttaattacagggtcaattttcagacttcacgtatattacgtggttaatttaaattaataaccctattttaaattgtacttttgt 479565  T
Q  116 tgacaaaatgataaacctcttttattt 142  Q
    ||| |||||||||||| || |||||||    
T  479564 tgataaaatgataaacttcatttattt 479538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 32174 - 32303
Alignment:
Q  20 tcagaatacatgttatttaattacatggtcaattttcatacttca----tatgacgtggtcaatttcaattaataatcctattttaaattgcgcttttgt 115  Q
    ||||||||||||||||||||||| | ||| ||||||||  |||||    ||| || |||||||||||||||||||| ||||||||||||||   ||||||    
T  32174 tcagaatacatgttatttaattatagggtaaattttcaggcttcacgtatattacatggtcaatttcaattaataaccctattttaaattgtatttttgt 32273  T
Q  116 tgacaaaatgataaacctcttttatttcga 145  Q
    |||||||||||||||||| |||||||||||    
T  32274 tgacaaaatgataaaccttttttatttcga 32303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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