View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1988_high_21 (Length: 323)
Name: NF1988_high_21
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 18 - 312
Target Start/End: Complemental strand, 39082145 - 39081851
Alignment:
| Q |
18 |
atgagaagatccatctttagtttgatcaccatgtcatgcttgaaaatgatccataaaggctcttgttggataacagcatgtcttaatgttcctggcttag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082145 |
atgagaagatccatctttagtttgatcaccatgtcatgcttgaaaatgatccataaaggctcttgttggataacagcatgtcttaatgttcctggcttag |
39082046 |
T |
|
| Q |
118 |
gattcacagggtcatcacttgagtcaatgaccatgtaatattttccatctttacctccaattgcacgtctaccgaacccaatagcacattctgctagtct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39082045 |
gattcacagggtcatcacttgagtcaatgaccatgtaatattttccatctttacctccaattgcacgtctaccgaacccaatagcacattctgctagtct |
39081946 |
T |
|
| Q |
218 |
cttgcggttattttcccaattggggtcacatctccaacaatcatcaattggattgtttgtaccacaagcatcataataacccagttttcttctgt |
312 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39081945 |
cttgcggttgttttcccaattggggtcacatctccaacaatcatcaattggattgtttgtaccacaagcatcataataacccagttttcttctgt |
39081851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 39075669 - 39075588
Alignment:
| Q |
45 |
accatgtcatgcttgaaaatgatccataaaggctcttgttggataacagcatgtcttaatgttcctggcttaggattcacag |
126 |
Q |
| |
|
||||||||| ||||||| || ||||| || || |||| ||| |||||| ||| |||||||||||||||||| |||||||||| |
|
|
| T |
39075669 |
accatgtcacgcttgaagattatccacaatggttcttcttgaataacaccatatcttaatgttcctggctttggattcacag |
39075588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 43130958 - 43130877
Alignment:
| Q |
187 |
taccgaacccaatagcacattctgctagtctcttgcggttattttcccaattggggtcacatctccaacaatcatcaattgg |
268 |
Q |
| |
|
||||||||||||| ||||| |||||||| || | | ||| |||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
43130958 |
taccgaacccaattgcacaatctgctagcctttgtctgtttttttcccagtttgggtcacatctccaacaatcatcaattgg |
43130877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 268
Target Start/End: Original strand, 7593834 - 7593940
Alignment:
| Q |
162 |
ccatctttacctccaattgcacgtctaccgaacccaatagcacattctgctagtctcttgcggttattttcccaattggggtcacatctccaacaatcat |
261 |
Q |
| |
|
|||| |||||| ||||||||| | | || || ||||| ||||| || |||||||| | ||||| || |||||||| |||||||||||||||||||||| |
|
|
| T |
7593834 |
ccatttttaccaccaattgcatcttttccaaatccaattgcacaatcagctagtctttgtcggttgttctcccaatttgggtcacatctccaacaatcat |
7593933 |
T |
|
| Q |
262 |
caattgg |
268 |
Q |
| |
|
||||||| |
|
|
| T |
7593934 |
caattgg |
7593940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University