View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1988_high_25 (Length: 279)
Name: NF1988_high_25
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 41836732 - 41836947
Alignment:
| Q |
18 |
gaggtacacgtttatcgctaatgatataaactgctactttatgcaaaacctttttattcattgcttgattaattttgaataatttagaactagccaaaat |
117 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41836732 |
gaggtacatgtttatcgctaatgatataaacttctactttatgcaaaacctttttattcattgcttgattaattttgaataatttagaactagccaaaat |
41836831 |
T |
|
| Q |
118 |
gtgaggtagatttccaaattttactatatacatggagaccagcaaaattgtgttttaactgaatcgttttatgcagaatcttattgtttgtttgaaagta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41836832 |
gtgaggtagatttccaaattttactatatacatggagaccagcaaatttgtgttttaactgaatcgttttatgcagaatcttattgtttgtttgaaagta |
41836931 |
T |
|
| Q |
218 |
t--atatgatcgagaa |
231 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
41836932 |
taaatatgatcgagaa |
41836947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 177
Target Start/End: Complemental strand, 14749320 - 14749229
Alignment:
| Q |
86 |
ttaattttgaataatttagaactagccaaaatgtgaggtagatttccaaattttactatatacatggagaccagcaaaattgtgttttaact |
177 |
Q |
| |
|
|||| ||||| | ||||| |||||| |||||||||||||| ||||||||||||||||||| |||| |||| ||| ||||||||||||| |
|
|
| T |
14749320 |
ttaactttgattcatttaaaactaggtaaaatgtgaggtagctttccaaattttactatatgcatgacgacccacaattttgtgttttaact |
14749229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 146
Target Start/End: Complemental strand, 14747213 - 14747153
Alignment:
| Q |
86 |
ttaattttgaataatttagaactagccaaaatgtgaggtagatttccaaattttactatat |
146 |
Q |
| |
|
|||| ||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
14747213 |
ttaactttgaatcatttaatactagttaaaatgtgaggtagctttccaaattttactatat |
14747153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University