View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_high_29 (Length: 259)
Name: NF1988_high_29
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_29 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 10 - 245
Target Start/End: Original strand, 38909921 - 38910156
Alignment:
| Q |
10 |
aagaaaataaccagccaaattgaaggctaagaaacactgtaaatcagtaattttttaaaaatcaaacattagttccttaaactaaatggattaattaatg |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38909921 |
aagaaaataaccagccaaattgaaggctaagaaacactgtaaatcagtaatttttttaaaatcaaacattagttccttaaactaaatggattaattaatg |
38910020 |
T |
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| Q |
110 |
acaagaaaaaacgaaatcatagccataaagctccagcttgtttaagcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaatccacc |
209 |
Q |
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| T |
38910021 |
acaagaaacaacgaaatcatagccataaagctccagcttgtttaagcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaatccacc |
38910120 |
T |
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| Q |
210 |
aaacaacttaccacctataaacaccattggaaactg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
38910121 |
aaacaacttaccacctataaacaccattggaaactg |
38910156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 130 - 233
Target Start/End: Original strand, 30540535 - 30540638
Alignment:
| Q |
130 |
agccataaagctccagcttgtttaagcaatggaaccaattcaccagaaatatgagtagccatgagacgatccaatccaccaaacaacttaccacctataa |
229 |
Q |
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|||||||||||||| ||||||||||| | || ||||||||||||||||||||||| ||||| | ||||||| ||| |||||||| || |||||||||| |
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| T |
30540535 |
agccataaagctcctgcttgtttaagaatggggaccaattcaccagaaatatgagtggccataattcgatccagtcctccaaacaaatttccacctataa |
30540634 |
T |
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| Q |
230 |
acac |
233 |
Q |
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|||| |
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| T |
30540635 |
acac |
30540638 |
T |
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