View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_high_35 (Length: 237)
Name: NF1988_high_35
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 6 - 221
Target Start/End: Original strand, 29258855 - 29259074
Alignment:
| Q |
6 |
tctatcattttctgattcaaattgcacaaatcaattgggacactagtgaagcctaagtctaa----gaaggtccgtcctaatcgataaaactagtactct |
101 |
Q |
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| T |
29258855 |
tctatcattttctgattcaaattacacaaatcaattgggacactagtgaagcctaagtctaattaagaaggtctgtcctaatcgataaaactagtactct |
29258954 |
T |
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| Q |
102 |
tgcaaacatgttgatcccttaaggaaacttgttggggaatcaaaacaatgtcttgagaacttttcaagaggccaaaagatattaaactcatcccaatgtt |
201 |
Q |
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| T |
29258955 |
tgcaaacatgttgatcccttaaggaaacttgttggggaatcaaaacaatgtcttgagaacttttcaagaggccaaaagatattaaactcatcccaatgtt |
29259054 |
T |
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| Q |
202 |
gctatcttcagactggattc |
221 |
Q |
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| T |
29259055 |
gctatcttcagactggattc |
29259074 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 29266887 - 29266979
Alignment:
| Q |
82 |
atcgataaaactagtactcttgcaaacatgt-tgatcccttaaggaaacttgttggggaatcaaaacaatgtcttgagaacttttcaagaggc |
173 |
Q |
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| T |
29266887 |
atcgataacactagtactcttgcaaacatgtattatcactcaatgaaacttattggggaatcaaaaccatgtcttcaaaacttttcaagaggc |
29266979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 2376743 - 2376915
Alignment:
| Q |
1 |
aatcttctatcattttctgattcaaattgcacaaatcaattgggacactagtgaagcctaagtctaagaaggtccgtcctaa--tcgataaaactagtac |
98 |
Q |
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| T |
2376743 |
aatcttctttcatttgctgatttgaattacacaaatcagttgggac--tattgaagcctaagtctgagatggtgtgtccgaaaatcgataacactagtac |
2376840 |
T |
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| Q |
99 |
tcttgcaaacatgttgatcccttaaggaaacttgttggggaatcaaaacaatgtcttgagaacttttcaagaggc |
173 |
Q |
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||||||||||||||||||| || |||| |||||||| |||||||||||| ||||||| | | || |||||||||| |
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| T |
2376841 |
tcttgcaaacatgttgatcactcaaggtaacttgtttgggaatcaaaaccatgtctttaaagctgttcaagaggc |
2376915 |
T |
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