View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_high_36 (Length: 232)
Name: NF1988_high_36
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 217
Target Start/End: Complemental strand, 29549424 - 29549225
Alignment:
| Q |
18 |
caaagagaattgaatctcaacaatccatcatctcaatcctccattgttatcctcaaaaagtaaccatggccgatgaagttattcttctagatttttggcc |
117 |
Q |
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| T |
29549424 |
caaagagaattgaatctcaacaatccatcatctcaatcctccattgttatcctcaaaaagtaaccatggccgatgaagttattcttctagatttttggcc |
29549325 |
T |
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| Q |
118 |
aagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacatagaagaagaattaatgtcattgaaaaagagtcctttg |
217 |
Q |
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| T |
29549324 |
aagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacatagaagaagaattaatgtcattgaaaaagagtcctttg |
29549225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 29511340 - 29511227
Alignment:
| Q |
81 |
ccatggccgatgaagttattcttctagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacat |
180 |
Q |
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| T |
29511340 |
ccatggctgatgaagtgattctgctagattactgggcaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaagcatgagtacaa |
29511241 |
T |
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| Q |
181 |
agaagaagaattaa |
194 |
Q |
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| T |
29511240 |
agaagaagatttaa |
29511227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 29535594 - 29535481
Alignment:
| Q |
81 |
ccatggccgatgaagttattcttctagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacat |
180 |
Q |
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| T |
29535594 |
ccatggctgataaagtgattctgctagattactgggtaagtccatttggcatgagggtcagaatagccctagctgaaaagggtatcaagtatgagtacag |
29535495 |
T |
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| Q |
181 |
agaagaagaattaa |
194 |
Q |
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| T |
29535494 |
agaagaagacttaa |
29535481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 29518458 - 29518345
Alignment:
| Q |
81 |
ccatggccgatgaagttattcttctagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacat |
180 |
Q |
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| T |
29518458 |
ccatggctgatgaagtgattctgctagattactgggtaagtccatttggcatgagggtcagaatagccttagctgaaaagggtatcaaacatgagtacag |
29518359 |
T |
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| Q |
181 |
agaagaagaattaa |
194 |
Q |
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||||||||| |||| |
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| T |
29518358 |
agaagaagatttaa |
29518345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 194
Target Start/End: Complemental strand, 29507519 - 29507407
Alignment:
| Q |
82 |
catggccgatgaagttattcttctagatttttggccaagtccatttggaataagagttagaatagcacttgctgaaaagggtatcaagtataaatacata |
181 |
Q |
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|||||| |||||||| ||||| || ||| |||||||||||||||||||| ||| | | ||||| | |||||||||||||||||| || | |||| | |
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| T |
29507519 |
catggctgatgaagtgattctgcttaattactggccaagtccatttggaatgagactcaaaatagtcttagctgaaaagggtatcaagcatgagtacaga |
29507420 |
T |
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| Q |
182 |
gaagaagaattaa |
194 |
Q |
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|||||||| |||| |
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| T |
29507419 |
gaagaagacttaa |
29507407 |
T |
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