View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1988_high_7 (Length: 451)

Name: NF1988_high_7
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1988_high_7
NF1988_high_7
[»] chr4 (5 HSPs)
chr4 (254-439)||(54153374-54153558)
chr4 (204-243)||(54153318-54153357)
chr4 (360-410)||(2724031-2724081)
chr4 (356-407)||(44564173-44564224)
chr4 (353-410)||(8306340-8306397)
[»] chr6 (1 HSPs)
chr6 (127-196)||(29279776-29279845)
[»] chr2 (3 HSPs)
chr2 (128-196)||(28296897-28296965)
chr2 (127-189)||(22142287-22142349)
chr2 (360-410)||(29978365-29978415)
[»] chr8 (4 HSPs)
chr8 (360-410)||(2954096-2954146)
chr8 (145-196)||(14836399-14836450)
chr8 (165-196)||(27229237-27229268)
chr8 (360-401)||(39529660-39529701)
[»] chr3 (3 HSPs)
chr3 (145-197)||(5578166-5578218)
chr3 (144-196)||(51646885-51646937)
chr3 (144-196)||(32077494-32077546)
[»] scaffold0596 (1 HSPs)
scaffold0596 (142-192)||(1692-1742)
[»] chr5 (2 HSPs)
chr5 (366-410)||(13633883-13633927)
chr5 (360-410)||(13298033-13298082)
[»] chr1 (5 HSPs)
chr1 (359-410)||(48103922-48103973)
chr1 (369-410)||(1484190-1484231)
chr1 (127-196)||(29308696-29308765)
chr1 (370-410)||(32140395-32140435)
chr1 (374-410)||(38028709-38028745)
[»] chr7 (4 HSPs)
chr7 (360-410)||(41217008-41217058)
chr7 (366-408)||(41383507-41383549)
chr7 (360-410)||(41714272-41714322)
chr7 (360-410)||(44533577-44533627)
[»] scaffold0024 (1 HSPs)
scaffold0024 (360-405)||(88518-88563)
[»] scaffold0015 (1 HSPs)
scaffold0015 (353-410)||(43244-43301)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 254 - 439
Target Start/End: Original strand, 54153374 - 54153558
Alignment:
Q  254 gttacaattaaaaaatatatttaattgtatgctttttaaattttaatataacaaaacaatatatgtgctctcaagtggtctattggtttatgcccccaat 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||    
T  54153374 gttacaattaaaaaatatatttaattgtatgctttttaaattttaatataacaaaacaatatatgtgctcccaagtggtctattggtttatg-ccccaat 54153472  T
Q  354 tcatcttttttatcaatttacatataaattttcaagattcaaatatatgattttattcaatatctacttttaatgttcatgtatat 439  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  54153473 tcatcttttttatcaatttacatataaattttcaagattcaaatatatggttttattcaatatctacttttaatgttcatgtatat 54153558  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 204 - 243
Target Start/End: Original strand, 54153318 - 54153357
Alignment:
Q  204 attatacctatgcaaacataccttatttcatattaattaa 243  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  54153318 attatacctacgcaaacataccttatttcatattaattaa 54153357  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 2724031 - 2724081
Alignment:
Q  360 tttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||| |||||||||||||| ||||||||| |||| ||||||||||||||||    
T  2724031 ttttaatcaatttacatatgaattttcaaaattctaatatatgattttatt 2724081  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 44564173 - 44564224
Alignment:
Q  356 atcttttttatcaatttacatataaattttcaagattcaaatatatgatttt 407  Q
    |||||||| ||||||||  |||| |||||||||||||||||| |||||||||    
T  44564173 atctttttgatcaatttgtatatgaattttcaagattcaaatttatgatttt 44564224  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Original strand, 8306340 - 8306397
Alignment:
Q  353 ttcatcttttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||||| |||| |||||||| | ||| |||||| |||||||||||||||| |||||||    
T  8306340 ttcatccttttgatcaatttccttatgaattttaaagattcaaatatatggttttatt 8306397  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 29279845 - 29279776
Alignment:
Q  127 ggcgccaaagtaggaaggattagagttggcacaaaaagttaacaatgctattcatattagaaataagtat 196  Q
    ||||||||| || | |||||||| ||||||||||   |||||||||||||||||||||||||||||||||    
T  29279845 ggcgccaaattaagtaggattagggttggcacaatttgttaacaatgctattcatattagaaataagtat 29279776  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 196
Target Start/End: Original strand, 28296897 - 28296965
Alignment:
Q  128 gcgccaaagtaggaaggattagagttggcacaaaaagttaacaatgctattcatattagaaataagtat 196  Q
    |||||||| || | |||||||| ||||||||||   |||||||||||||||||||||||||||||||||    
T  28296897 gcgccaaaataagtaggattagggttggcacaatttgttaacaatgctattcatattagaaataagtat 28296965  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 127 - 189
Target Start/End: Original strand, 22142287 - 22142349
Alignment:
Q  127 ggcgccaaagtaggaaggattagagttggcacaaaaagttaacaatgctattcatattagaaa 189  Q
    ||||||||| || | | |||||| ||||||||||   ||||||||||||||||||||||||||    
T  22142287 ggcgccaaaataagtaagattagggttggcacaatttgttaacaatgctattcatattagaaa 22142349  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 29978365 - 29978415
Alignment:
Q  360 tttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||| |||||| |||||||  |||||||||||||||||||||| |||||||    
T  29978365 ttttaatcaatctacatattgattttcaagattcaaatatatggttttatt 29978415  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 2954096 - 2954146
Alignment:
Q  360 tttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||| ||||||||||||||||||||||||||||||||| |||| |||||||    
T  2954096 ttttaatcaatttacatataaattttcaagattcaaatttatggttttatt 2954146  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 145 - 196
Target Start/End: Complemental strand, 14836450 - 14836399
Alignment:
Q  145 attagagttggcacaaaaagttaacaatgctattcatattagaaataagtat 196  Q
    ||||| |||||||||||  |||||||||| ||||||||||||||||||||||    
T  14836450 attagggttggcacaaattgttaacaatgttattcatattagaaataagtat 14836399  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 196
Target Start/End: Complemental strand, 27229268 - 27229237
Alignment:
Q  165 ttaacaatgctattcatattagaaataagtat 196  Q
    ||||||||||||||||||||||||||||||||    
T  27229268 ttaacaatgctattcatattagaaataagtat 27229237  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 401
Target Start/End: Complemental strand, 39529701 - 39529660
Alignment:
Q  360 tttttatcaatttacatataaattttcaagattcaaatatat 401  Q
    |||| |||||||| |||||||||||| |||||||||||||||    
T  39529701 ttttgatcaatttgcatataaatttttaagattcaaatatat 39529660  T

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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 145 - 197
Target Start/End: Original strand, 5578166 - 5578218
Alignment:
Q  145 attagagttggcacaaaaagttaacaatgctattcatattagaaataagtata 197  Q
    ||||| |||||||||||  |||||||||| |||||||||||||||||||||||    
T  5578166 attagggttggcacaaattgttaacaatgttattcatattagaaataagtata 5578218  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 51646937 - 51646885
Alignment:
Q  144 gattagagttggcacaaaaagttaacaatgctattcatattagaaataagtat 196  Q
    |||||| |||| ||||||  |||||||||| ||||||||||||||||||||||    
T  51646937 gattagggttgacacaaattgttaacaatgttattcatattagaaataagtat 51646885  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 32077494 - 32077546
Alignment:
Q  144 gattagagttggcacaaaaagttaacaatgctattcatattagaaataagtat 196  Q
    |||||| ||||||| |||  |||| ||||| ||||||||||||||||||||||    
T  32077494 gattagggttggcataaattgttagcaatgttattcatattagaaataagtat 32077546  T

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Target: scaffold0596 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 1692 - 1742
Alignment:
Q  142 aggattagagttggcacaaaaagttaacaatgctattcatattagaaataa 192  Q
    |||||||| |||||||||||| ||||||| || ||||||||||||||||||    
T  1692 aggattagggttggcacaaaatgttaacattgttattcatattagaaataa 1742  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 410
Target Start/End: Complemental strand, 13633927 - 13633883
Alignment:
Q  366 tcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    ||||||| ||||| |||||||||||||||||||| ||||||||||    
T  13633927 tcaatttgcatatgaattttcaagattcaaatatgtgattttatt 13633883  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 13298033 - 13298082
Alignment:
Q  360 tttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||| |||||||||||||| |||||||||||||||||| | ||||||||||    
T  13298033 ttttgatcaatttacatatgaattttcaagattcaaat-tttgattttatt 13298082  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 48103922 - 48103973
Alignment:
Q  359 ttttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||||| ||||||||||||| |||||| ||||||||||| ||||| ||||||    
T  48103922 ttttttgtcaatttacatatgaattttgaagattcaaatctatgagtttatt 48103973  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 410
Target Start/End: Original strand, 1484190 - 1484231
Alignment:
Q  369 atttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||| |||||||||||||||| |||||||| |||||||||||    
T  1484190 atttgcatataaattttcaagtttcaaatacatgattttatt 1484231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 29308765 - 29308696
Alignment:
Q  127 ggcgccaaagtaggaaggattagagttggcacaaaaagttaacaatgctattcatattagaaataagtat 196  Q
    ||||||||| || | |||||||  |||| |||||   |||||||||| ||||||||||||||||||||||    
T  29308765 ggcgccaaaataagtaggattaaggttgacacaatttgttaacaatgttattcatattagaaataagtat 29308696  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 370 - 410
Target Start/End: Complemental strand, 32140435 - 32140395
Alignment:
Q  370 tttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||||| ||| |||||||||||| |||||||||||||||||    
T  32140435 tttacacatacattttcaagatttaaatatatgattttatt 32140395  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 410
Target Start/End: Complemental strand, 38028745 - 38028709
Alignment:
Q  374 catataaattttcaagattcaaatatatgattttatt 410  Q
    |||||||||||||||||||||||| || |||||||||    
T  38028745 catataaattttcaagattcaaatctacgattttatt 38028709  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 41217058 - 41217008
Alignment:
Q  360 tttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||| ||||||||  |||||||| ||||||| |||||||||||||||||||    
T  41217058 ttttaatcaatttgtatataaatcttcaagaatcaaatatatgattttatt 41217008  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 366 - 408
Target Start/End: Original strand, 41383507 - 41383549
Alignment:
Q  366 tcaatttacatataaattttcaagattcaaatatatgatttta 408  Q
    ||||||||||||| |||||| || |||||||||||||||||||    
T  41383507 tcaatttacatatgaatttttaatattcaaatatatgatttta 41383549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 41714272 - 41714322
Alignment:
Q  360 tttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    |||| |||||||||||||| ||||||||||||||| |  ||||||||||||    
T  41714272 ttttaatcaatttacatatgaattttcaagattcatacctatgattttatt 41714322  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 44533577 - 44533627
Alignment:
Q  360 tttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    ||||||||||||| |||||  ||||||||||||||||| |||| |||||||    
T  44533577 tttttatcaatttgcatatggattttcaagattcaaatctatggttttatt 44533627  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 405
Target Start/End: Original strand, 88518 - 88563
Alignment:
Q  360 tttttatcaatttacatataaattttcaagattcaaatatatgatt 405  Q
    |||||||| |||||||||| ||||||||||  ||||||||||||||    
T  88518 tttttatctatttacatatgaattttcaagcatcaaatatatgatt 88563  T

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Target: scaffold0015 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 410
Target Start/End: Complemental strand, 43301 - 43244
Alignment:
Q  353 ttcatcttttttatcaatttacatataaattttcaagattcaaatatatgattttatt 410  Q
    ||||||||||| |||||| |  |||| ||||||||||||||||||  |||||||||||    
T  43301 ttcatctttttaatcaatctgtatatgaattttcaagattcaaatcaatgattttatt 43244  T

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