View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_high_8 (Length: 417)
Name: NF1988_high_8
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 6618331 - 6617940
Alignment:
| Q |
17 |
agtaattaaaagaaatatttttatctacccttgcttgttatcaatactttgattttcagagaagcattaaagagttgtgataattgtagttaaaatctcg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||| |
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| T |
6618331 |
agtaattaaaagaaatatttttatctacccttgcttgtcatcaatactttgattttcagataagcatcaaagagttgtgataattgcagttaaaatctcg |
6618232 |
T |
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| Q |
117 |
atttaaaacacttgtaaaagtctacaatttcatgggtgctagccgatttcctgtgtatgcagaatcaggtttgggtaagatcatgtgaaattgccacgga |
216 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6618231 |
atttaaaacacttgtaaaagtctacaatttcatgcgtgctagccgatttcctgtgtatgcagaatcaggtttgggtaagatcatgtgaaattgccacgga |
6618132 |
T |
|
| Q |
217 |
aaaacttcgtgcaatcacatgttttttcccttccgatttcagtaaacaggtcagattgttttggaaagcttttctgggtgaattctga-ctggactggca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6618131 |
aaaacttcgtgcaatcacatgttttttcccttccgatttcagtaaacaggtcagattgttttggaaagcttttctgggtgaattctgacctggactggca |
6618032 |
T |
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| Q |
316 |
ataaaacctgtttccactttatatactgggaccctttgtgtcgtttcgcttactgaaaacactattcccttcgtctcatgggtgaatctgtg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6618031 |
ataaaacctgtttccactttatatactgggaccctttgtgtcgtttcgcttactgaaaacactattcccttcgtctcatgggtgaatctgtg |
6617940 |
T |
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