View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_1 (Length: 874)
Name: NF1988_low_1
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 651; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 651; E-Value: 0
Query Start/End: Original strand, 36 - 752
Target Start/End: Original strand, 43715834 - 43716544
Alignment:
| Q |
36 |
tccaacttttaaatatgtcaaataataagaaataaagcaacagaaccaactatctcatttgtgcatgtcaataaagattatattaaaaccttaccacttg |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
43715834 |
tccaacttttaaatatgtcaaataataagaaataaagcaacagaaccaactatctcatttgtgcatgtcaataaagattctattaaaaccttaccaattg |
43715933 |
T |
|
| Q |
136 |
aatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccagtggtccaccagtcctctgca |
235 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43715934 |
aatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccagtggtccaccagtcctctgca |
43716033 |
T |
|
| Q |
236 |
gtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcctcctccatatttttatctgccgtaatcagagacaacaagaagaag |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
43716034 |
gtttaggaagacaatttcaatcagctttggagctggctcaatatcactgtcctcctcctccatatttttatctgccatagtcagagacaacaagaagaag |
43716133 |
T |
|
| Q |
336 |
aagctagaaaaaataataacaagttaacaatcatttacaatcaccagatcccactcctgcaggtggtggctcaattaatgataattattcaaagatcaca |
435 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
43716134 |
aagctagaaaaaataataacaaattaacaatcatttacaatcaccagatcccactcctgcaggtggtggctcaattaatgataataattcaaag-----a |
43716228 |
T |
|
| Q |
436 |
tcacatacagaggaaatcatattccacaaactctgttgataccctttgaaatataataattgtccaaagaaaccagaatatctgcagaataaactaatcg |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43716229 |
tcacatacagaggaaatcatattccacaaactctgttgataccctttgaaatataataattgtccaaagaaaccagaatatctgcagaataaactaatcg |
43716328 |
T |
|
| Q |
536 |
agtaaacatgtagaaaatatataaagacttatattaacttagatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaataaagactt |
635 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
43716329 |
agtaaacatgtagaaaatatataaagacttatattaacttagatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaat--agactt |
43716426 |
T |
|
| Q |
636 |
atcttcaggtttactgggagacactgattcatctctagc-tttctatgttattaacatataaaaagaagttgaaaagtaatgaacttttgtaaggcgaag |
734 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43716427 |
atcttcaggtttactgggagacactgattcatctctagcttttctatgttattaacatataaaaagaagttgaaaagtaatgaacttttgtaaggcgaag |
43716526 |
T |
|
| Q |
735 |
aagataagttgagatgaa |
752 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
43716527 |
aagataagttgagatgaa |
43716544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 789 - 858
Target Start/End: Original strand, 43716542 - 43716611
Alignment:
| Q |
789 |
gaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatatt |
858 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43716542 |
gaaatcaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatatt |
43716611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 124 - 290
Target Start/End: Complemental strand, 6816803 - 6816638
Alignment:
| Q |
124 |
ccttaccacttgaatgagaagacatttcaaatatgatttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccagtggtccac |
223 |
Q |
| |
|
|||||||| ||| |||| |||||| |||||||||| ||||| ||| | || ||| | ||||| |||||||| |||||||| ||||||||||| ||||| |
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| T |
6816803 |
ccttaccaattgcatgaaaagacacttcaaatatgtcttttc-agtccgattcaagcgttcaaccgtaattctaagatatggttcaacccagtgatccac |
6816705 |
T |
|
| Q |
224 |
cagtcctctgcagtttaggaagacaatttcaatcagctttggagctggctcgatatcactgtcctcc |
290 |
Q |
| |
|
||||||| || || ||||||||| |||||| ||||||||||||||| | |||||| | |||||| |
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|
| T |
6816704 |
ttgtcctctacaattctggaagacaacttcaataagctttggagctggcacaatatcattatcctcc |
6816638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 776 - 858
Target Start/End: Complemental strand, 6814847 - 6814765
Alignment:
| Q |
776 |
ccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatatt |
858 |
Q |
| |
|
||||||||||||| |||| || |||||||||| | || ||||||||||| |||||||||| ||||||| ||||| |||||| |
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|
| T |
6814847 |
ccatacttggaaaaaaatcgattgcccaatctgccaatgcttccatcatcactggccaaagactccacatatccagagatatt |
6814765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 215; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 61 - 476
Target Start/End: Complemental strand, 52891770 - 52891346
Alignment:
| Q |
61 |
taagaaataaagcaacagaa-ccaactatctcatttgtgcatgtcaataaagattatattaaaaccttaccacttgaatgagaagacatttcaaatatga |
159 |
Q |
| |
|
||||||| |||||||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52891770 |
taagaaagaaagcaacaggagccaactatctcatttgtgcatgtcaatgaagattctattaaaaccttaccacttgaatgagaagacatttcaaatatga |
52891671 |
T |
|
| Q |
160 |
tttttccagttctatgcaaactttcaattgtaattctgagatatggctcaacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcag |
259 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52891670 |
tttt-ccagttctatgcaaacgttcaattgtaattctgagatacggctcaacccagtggtccaccagtcctctgcagtttaggaagacaatttcaatcag |
52891572 |
T |
|
| Q |
260 |
ctttggagctggctcgatatcactgtcctcctcctccatatttttatctgccgtaatc---------agagaca--------acaagaagaagaagctag |
342 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| | | ||| |||| ||||||||||||| |
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|
| T |
52891571 |
ctttggagctggctcaatatcactgtc------ctccatatttttatctgccataatctgcaatgtgaaatacaaatcagagacaacaagaagaagctag |
52891478 |
T |
|
| Q |
343 |
aaaaaataataacaagttaacaatcatttacaatcaccagatcccactcc------tgcaggtggtggctcaattaatgataattattcaaagatcacat |
436 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||| |||||||| || |
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|
| T |
52891477 |
aaaaaataat---aagttaacaatcatttacaatcaccagatcccattccagtcctagcaggtggtggccaaattaatgataataattcaaag-----at |
52891386 |
T |
|
| Q |
437 |
cacatacagaggaaatcatattccacaaactctgttgata |
476 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52891385 |
cacttacagaggaaatcatattccacaaactctgttgata |
52891346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 660 - 858
Target Start/End: Complemental strand, 52887439 - 52887245
Alignment:
| Q |
660 |
tgattcatctctagctttctatgttattaacatataaaaa-gaagttgaaaagtaatgaacttttgtaaggcgaagaagataagttgagatgaattgtag |
758 |
Q |
| |
|
|||||||||||||||| |||| |||||||||| |||||| ||||| ||| ||| |||||||||| ||||| |||| ||||||||||| ||||| | |
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|
| T |
52887439 |
tgattcatctctagctgtctaagttattaacaagtaaaaaagaagtccaaa-gtactgaacttttggaaggcaaaga---taagttgagat-aattgcaa |
52887345 |
T |
|
| Q |
759 |
tcagatgtatttgagagccatacttggaaagaaataaatagcccaatctgatagtgtttccatcatcaatggccaaagattccacatgtccagtgatatt |
858 |
Q |
| |
|
||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
52887344 |
tcaaatgtagttgagagccatacttgaaaagaaatcaatagcccaatctgatagtgcttccatcatcaatggccaaaggttccacatgtccagtgatatt |
52887245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 556 - 628
Target Start/End: Complemental strand, 52891029 - 52890957
Alignment:
| Q |
556 |
ataaagacttatattaacttagatgtcagagcaaccaggaaaatatttgaaagatattccatgtttttgaata |
628 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52891029 |
ataaagacttatattaacttaaatgtcagagcaaccaggaaaatatttgacagatattccatgtttttgaata |
52890957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 491 - 553
Target Start/End: Complemental strand, 52891300 - 52891238
Alignment:
| Q |
491 |
ataattgtccaaagaaaccagaatatctgcagaataaactaatcgagtaaacatgtagaaaat |
553 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
52891300 |
ataattgtccaaaggaaccataatatctgcagaataaactaatcaagtaaatatgtagaaaat |
52891238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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