View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_10 (Length: 403)
Name: NF1988_low_10
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 2570217 - 2570592
Alignment:
| Q |
18 |
gatacaataacccttgcttatgtttagcatgcaatatttcaacggtttgctgaagataggttttttaatcaaattccaagcattcttatcacagctaaag |
117 |
Q |
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| T |
2570217 |
gatacaataacccttgcttatgtttagcatgcaatatttcaacggcttgctgaagataggttttttaatcaaattccaagcattcttatcacagctaaag |
2570316 |
T |
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| Q |
118 |
gttacccagatattgccacaaggtactctgcacactactagtctgcagtatacagaattaaataacataaaagttctgatgtgaagcttttagaagttct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2570317 |
gttacccagatattgccacaaggtactctgcacactactagtctgcagtatacagaattaaataacataaaagttctgatgtgaagcttttagaagttct |
2570416 |
T |
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| Q |
218 |
gctctcatcacatttgatgatataccatatcatatatcgtagtattacccttctgatgggtgctttaatgtctaaaactgaaatctaaatgcagatttct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2570417 |
gctctcatcacatttgatgatataccatatcatatatcgtagtattacccttctgatgggtgctttaatgtctaaaactgaaatctaaatgcagatttct |
2570516 |
T |
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| Q |
318 |
tcttcatcgaatcagtcgagcatttccagccttgccaattttagctttggttgattggtacggtagcttgcctttg |
393 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
2570517 |
tcttcatcgaatcagtcgagcatttccagacttgccaattttagctttggtggattggtacggtagcttgcctttg |
2570592 |
T |
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