View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_12 (Length: 369)
Name: NF1988_low_12
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_12 |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 12 - 354
Target Start/End: Complemental strand, 21790283 - 21789941
Alignment:
| Q |
12 |
atgaatatgaaaacttctttaattcaaacaaattcatgtttcgattcaaacagacagaacaaagaaaaaaggcactcatcatttatgagatactcaaggg |
111 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21790283 |
atgaatatgaaaacttctttaattcaaacaaattcgtgtttcgattcaaacagacagaacaaagaaaaaaggcactcatcatttatgagatactcaaggg |
21790184 |
T |
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| Q |
112 |
acacaccaacttaacccnnnnnnnnnnnnnnnnttttcaacacaattcttagagaattgaagtgcactaattgccttaccagaagacaattattacggtg |
211 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21790183 |
acacaccaacttaacccaaaaaattttaaaaaattttcaacacaattcttagagagttgaagtgcactaattgccttaccagaagacaattattacggtg |
21790084 |
T |
|
| Q |
212 |
caatgccaacacacacttgacctatttttgtaacataatttaatcgtacaaaagcaacattgccataacaaaccacctttactagcaagccgggtcaacc |
311 |
Q |
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| T |
21790083 |
caatgccaacacacacttgacctatttttgtaacataatttaatcgtacaaaagcaacattgccataacaaaccacctttactagcaagccgggtcaacc |
21789984 |
T |
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| Q |
312 |
gcaaaccatgtttgaatgaaagttagagcaagggcgataaacg |
354 |
Q |
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| T |
21789983 |
gcaaaccatgtttgaatgaaagttagagcaagggcgataaacg |
21789941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 346
Target Start/End: Complemental strand, 21787380 - 21787191
Alignment:
| Q |
162 |
agagaattgaagtgcactaattgccttaccagaagacaattatta----cggtgcaatgccaacacacacttgacctatttttgtaacataattt-aatc |
256 |
Q |
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| T |
21787380 |
agagaagtaaagtacactacttgccttaccagaagacaattattatgcacggtgcaataccaacacatactcgacctatttttgttacgaatttttaatt |
21787281 |
T |
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| Q |
257 |
gtacaaaagcaacattgccataacaaaccacctttactagcaagccgggtcaaccgcaaaccatgtttgaatgaaagttagagcaagggc |
346 |
Q |
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| T |
21787280 |
gtatgaaagcaacattgccataacgaaccacctttatttgctagccgggttaaccgtaaaccatgtttgaatgaaagtaagaacaagggc |
21787191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 352
Target Start/End: Complemental strand, 21995148 - 21995017
Alignment:
| Q |
222 |
acacacttgacctatttttgtaacataattt-aatcgtacaaaagcaacattgccataacaaaccacctttactagcaagccgggtcaaccgcaaaccat |
320 |
Q |
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| T |
21995148 |
acacacttgacctatttttgttacgaaattttaatcttaagaaagcaacattgccataacaaaccacctttatttactagccggttgaactgtaaaccat |
21995049 |
T |
|
| Q |
321 |
gtttgaatgaaagttagagcaagggcgataaa |
352 |
Q |
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| T |
21995048 |
gtctgaattaaagtaagagcaagggcgataaa |
21995017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 21667175 - 21667087
Alignment:
| Q |
266 |
caacattgccataacaaaccacctttactagcaagccgggtcaaccgcaaaccatgtttgaatgaaagttagagcaagggcgataaacg |
354 |
Q |
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| T |
21667175 |
caacattgtcataacgagccacctttattagcaagccgggtgaatcgtaaaccatgtctgaatgaaagtaagaacaatggcgataaacg |
21667087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 21765786 - 21765706
Alignment:
| Q |
266 |
caacattgccataacaaaccacctttactagcaagccgggtcaaccgcaaaccatgtttgaatgaaagttagagcaagggc |
346 |
Q |
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| T |
21765786 |
caacattgtcataacgaaccaccattatttgctagccgggtgaaccgtaaaccatgtctgaatgaaagtaagagcaagggc |
21765706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 303 - 354
Target Start/End: Complemental strand, 21793630 - 21793579
Alignment:
| Q |
303 |
gggtcaaccgcaaaccatgtttgaatgaaagttagagcaagggcgataaacg |
354 |
Q |
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|||| ||||| ||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
21793630 |
gggttaaccgtaaaccatgtctgaatgaaagtaagagcaagggcgataaacg |
21793579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 128
Target Start/End: Complemental strand, 21794202 - 21794121
Alignment:
| Q |
42 |
aattcatgtttcgattcaaacagacagaacaaagaaaaaaggcactcatcatttatgagatactc---aagggacacaccaacttaaccc |
128 |
Q |
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| T |
21794202 |
aattcatgtttcaattcaaacagacaaaacaaag--------cactcatcatttatgcgatactcaagaagggacacaccaacttaaccc |
21794121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 302 - 351
Target Start/End: Complemental strand, 21653681 - 21653632
Alignment:
| Q |
302 |
cgggtcaaccgcaaaccatgtttgaatgaaagttagagcaagggcgataa |
351 |
Q |
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| T |
21653681 |
cgggtaaaccgtaaaccatgtctgaatgaaagtaagagcaagggcgataa |
21653632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 354
Target Start/End: Complemental strand, 15715489 - 15715402
Alignment:
| Q |
266 |
caacattgccataacaaaccacctttactagcaagccgggtcaaccgcaaaccatgtttgaatgaaagttagagcaagggcgataaacg |
354 |
Q |
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|||||||| |||||| |||||||||| | || || ||||| ||| | ||| ||||| ||||||||||| ||||||||||||||||||| |
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| T |
15715489 |
caacattgtcataacgaaccacctttttt-gctaggcgggttaacagtaaatcatgtctgaatgaaagtaagagcaagggcgataaacg |
15715402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 346
Target Start/End: Complemental strand, 21706160 - 21706080
Alignment:
| Q |
266 |
caacattgccataacaaaccacctttactagcaagccgggtcaaccgcaaaccatgtttgaatgaaagttagagcaagggc |
346 |
Q |
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|||||||| |||||| || |||||||| | | |||||||| ||| | ||||||||| ||||||||||| ||||||||||| |
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| T |
21706160 |
caacattgtcataacgaagcacctttatttgttagccgggtgaactgtaaaccatgtctgaatgaaagtaagagcaagggc |
21706080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 259 - 346
Target Start/End: Complemental strand, 27137 - 27050
Alignment:
| Q |
259 |
acaaaagcaacattgccataacaaaccacctttactagcaagccgggtcaaccgcaaaccatgtttgaatgaaagttagagcaagggc |
346 |
Q |
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|||||| |||||||| |||||| ||| ||||||| | || |||||||| ||||| ||||||||| ||||||||||| ||||||||||| |
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| T |
27137 |
acaaaaacaacattgtcataacgaacaacctttatttgctagccgggtgaaccgtaaaccatgtctgaatgaaagtaagagcaagggc |
27050 |
T |
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