View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_13 (Length: 368)
Name: NF1988_low_13
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 36 - 358
Target Start/End: Original strand, 28673987 - 28674316
Alignment:
| Q |
36 |
tcacataacaacttttggatcaaaaaaccagagtgagggactaaaaaacttcaatttaaaaaggtgatcgatttcataagcgattgaaaataaaggatca |
135 |
Q |
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| T |
28673987 |
tcacatgacaaattttggattcaaaaacctgagtgagggactaaaatacttcaatttaaaaaggtgatcgatttcataagcgattgaaaataaaggatca |
28674086 |
T |
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| Q |
136 |
aaattgcaataaagtcaattatttaataagcttagttattaaataagcttagtaaagaaat-------gatgagctagccttcaaaagatccccaatgtt |
228 |
Q |
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| T |
28674087 |
aaattgcaataaagtcaattatttaataagcttagttattaaataagcttagtaaagatattatgcatgatgagctaaccttcaaaagatccccaatgtt |
28674186 |
T |
|
| Q |
229 |
cactacaagggcaccatgagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcataaag |
328 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28674187 |
cactacaagggcaccatgagagggaggcacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtattgtcataaag |
28674286 |
T |
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| Q |
329 |
ctactgtccgtgtgctttgtagtgcctatg |
358 |
Q |
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| T |
28674287 |
ctaccgtccgtgtgctttgtagtgcctatg |
28674316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 214 - 331
Target Start/End: Original strand, 28670268 - 28670385
Alignment:
| Q |
214 |
aagatccccaatgttcactacaagggcaccatgagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcaga |
313 |
Q |
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| T |
28670268 |
aagatctccaatgttcactacaagagctccatgaatgggaggtacatcaatccactgattgtcatgaagaatttgtaagccaccaatatgatcttgcaaa |
28670367 |
T |
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| Q |
314 |
agtactgtcataaagcta |
331 |
Q |
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|||||||| ||||||||| |
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| T |
28670368 |
agtactgtaataaagcta |
28670385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 214 - 332
Target Start/End: Original strand, 28648709 - 28648827
Alignment:
| Q |
214 |
aagatccccaatgttcactacaagggcaccatgagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcaga |
313 |
Q |
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||||||||||| |||||||||||| || |||||| ||||| |||||||| ||||||||||| ||||||||||| ||||||||||| |||||| |||| | |
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| T |
28648709 |
aagatccccaacgttcactacaagagctccatgaatgggagctacatcaatccattgattgttatgaagaacttctaagccaccaatatgatcttgcaaa |
28648808 |
T |
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| Q |
314 |
agtactgtcataaagctac |
332 |
Q |
| |
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|||| ||| |||||||||| |
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| T |
28648809 |
agtattgtaataaagctac |
28648827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 226 - 331
Target Start/End: Original strand, 28639414 - 28639519
Alignment:
| Q |
226 |
gttcactacaagggcaccatgagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctgcagaagtactgtcata |
325 |
Q |
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|||||||||||| || |||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||| || || ||| ||| |
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| T |
28639414 |
gttcactacaagagctccatgaatgggagaaacatcaatccattgattgtcatgaagaacttctaagccaccaatatgatcttgcaaaactattgtaata |
28639513 |
T |
|
| Q |
326 |
aagcta |
331 |
Q |
| |
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|||||| |
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| T |
28639514 |
aagcta |
28639519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 28690523 - 28690629
Alignment:
| Q |
211 |
caaaagatccccaatgttcactacaagggcaccat-gagagggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaacatgatcctg |
309 |
Q |
| |
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||||||||| |||||||| || ||||| || |||| || ||| || |||||||| |||||||| ||||||||||||||||||||| |||| |||||| || |
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| T |
28690523 |
caaaagatcaccaatgtttacgacaagagctccattgatagg-agttacatcaatccattgatcgtcatgaagaacttgtaagccgccaatatgatcttg |
28690621 |
T |
|
| Q |
310 |
cagaagta |
317 |
Q |
| |
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|| ||||| |
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| T |
28690622 |
caaaagta |
28690629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 33761850 - 33761898
Alignment:
| Q |
251 |
ggaggtacatcaacccattgattgtcatgaagaacttgtaagccaccaa |
299 |
Q |
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| T |
33761850 |
ggaggaacatcaacccattgattctgatgaagaacttgaaaaccaccaa |
33761898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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