View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_16 (Length: 356)
Name: NF1988_low_16
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 43274992 - 43275329
Alignment:
| Q |
7 |
attctgtcttttggatccaaagcaaaacatcaacaaagtcatcatggtcttcattgactcctttctcgcgattgatatgatcttcaactacatcttccaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43274992 |
attctgtcttttggatccaaagcaaaacatcaacaaagtcatcatggtcttcattgactcctttctgacgattgatatgatcttcaactacatcttccaa |
43275091 |
T |
|
| Q |
107 |
aagttcatcaaattgtttagccacnnnnnnngctcttgcataaaatcctgaaacatgggtcacccaatcaagccagggaacataggctccaacaataaaa |
206 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43275092 |
aagttcatcaaattgtttagccactttttttgctcttgcataaaatccagaaacatgggtcacccaatcaagccaaggaacataggctccaacaataaaa |
43275191 |
T |
|
| Q |
207 |
gcactaagtgactcgttaaattccctcaacaacttcttaaatccctttccactttcaccatcatattttcttcctaaagcaaccctacaaactatatcag |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43275192 |
gcactaagtgactcgttaaattccctcaacaacttcttaaatccctttccactttcaccatcatattttcttcctaaagcaaccctacaaactatatcat |
43275291 |
T |
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| Q |
307 |
tagtaattttggaggctaattcacttatattcacaggt |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
43275292 |
tagtaattttggaggctaattcacttatattcacaggt |
43275329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 7 - 305
Target Start/End: Original strand, 43268102 - 43268400
Alignment:
| Q |
7 |
attctgtcttttggatccaaagcaaaacatcaacaaagtcatcatggtcttcattgactcctttctcgcgattgatatgatcttcaactacatcttccaa |
106 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||||||||||| || ||| | |||||||| ||| |||||||||||||| ||| | ||||| |
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| T |
43268102 |
attctgttctttggatccaaagcaaaacttcaacaaagtcatcatgctcgtcactatctcctttcggattattcatatgatcttcaacaacaccctccaa |
43268201 |
T |
|
| Q |
107 |
aagttcatcaaattgtttagccacnnnnnnngctcttgcataaaatcctgaaacatgggtcacccaatcaagccagggaacataggctccaacaataaaa |
206 |
Q |
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||| |||||||||||||||||||| |||||||||||| ||||||||| |||| | | |||||||||||| ||||||||| | ||||||| |||| |
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| T |
43268202 |
aagatcatcaaattgtttagccaccttttttgctcttgcataatatcctgaaagatggctgaaccaatcaagccaaggaacatagtccccaacaacaaaa |
43268301 |
T |
|
| Q |
207 |
gcactaagtgactcgttaaattccctcaacaacttcttaaatccctttccactttcaccatcatattttcttcctaaagcaaccctacaaactatatca |
305 |
Q |
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|||| |||| |||| |||| ||| |||| ||||| ||||||||| ||| |||||||| ||| |||||||| ||| |||||||||||||||||||| |
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| T |
43268302 |
gcaccaagtaactcagtaaaatccatcaataactttgaaaatcccttcccattttcaccactatactttcttcccaaaacaaccctacaaactatatca |
43268400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 75 - 340
Target Start/End: Original strand, 43310761 - 43311026
Alignment:
| Q |
75 |
cgattgatatgatcttcaactacatcttccaaaagttcatcaaattgtttagccacnnnnnnngctcttgcataaaatcctgaaacatgggtcacccaat |
174 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||| |||||||| || ||||||||||||||||| ||||||| ||||| ||||| |
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| T |
43310761 |
cgattgatatgatcttcaactacatcctccaaaagatcatcaaactgtttagcaactttttttgctcttgcataaaatccagaaacattggtcatccaat |
43310860 |
T |
|
| Q |
175 |
caagccagggaacataggctccaacaataaaagcactaagtgactcgttaaattccctcaacaacttcttaaatccctttccactttcaccatcatattt |
274 |
Q |
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| T |
43310861 |
caagccaaggaacatagtcaccaacaacaaaagtaccaagtaactcagtaaaatccaataataactttttaaatcccttcccactttcaccactatactt |
43310960 |
T |
|
| Q |
275 |
tcttcctaaagcaaccctacaaactatatcagtagtaattttggaggctaattcacttatattcac |
340 |
Q |
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||| || |||||||||||||||||||||||| | || || ||||| ||| |||||||||||||| |
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| T |
43310961 |
tctccccaaagcaaccctacaaactatatcattgatagttgtggagagtaaatcacttatattcac |
43311026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 43310666 - 43310706
Alignment:
| Q |
7 |
attctgtcttttggatccaaagcaaaacatcaacaaagtca |
47 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| |
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| T |
43310666 |
attctgtcctttggatccaaagcaaaacatcaacaaagtca |
43310706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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