View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1988_low_18 (Length: 350)
Name: NF1988_low_18
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 28664050 - 28664383
Alignment:
| Q |
1 |
atgtgaaaaagatggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttactggagatcaagg |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
28664050 |
atgtgaaaaaaatggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcggagaataatcctcttaccggagatcaagg |
28664149 |
T |
|
| Q |
101 |
tgaaattcgaaaggattgtcgttacgttaatgtcaattagttatatgatattattatctccctatggtattatgtgtatttgcatttcatatatagaata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28664150 |
tgaaattcgaaaggattgtcgttacgttaatgccaattagttatatgatatgattatttcgctatggtattatgtgtatttgcatttcatatatagaata |
28664249 |
T |
|
| Q |
201 |
attaataatgccaacgggctaagacttctatgcttgtactttcgtatattagttgttcccacagatatgttacttgatcagccgacaaaggtaatagaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
28664250 |
attaataatgccaacgggctaagacttttatgcttgtactttcgtatattagttgttcccacagatattttacttgatcagccgacaaaggcaatagaaa |
28664349 |
T |
|
| Q |
301 |
ataattcacctttgaagtttgtgagtgtattatc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
28664350 |
ataattcacctttgaagtttgtgagtgtattatc |
28664383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 28606695 - 28606834
Alignment:
| Q |
1 |
atgtgaaaaagatggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttactggagatcaagg |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28606695 |
atgtgaaaaaaatggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttattggagatcaagg |
28606794 |
T |
|
| Q |
101 |
tgaaattcgaaaggattgtcgttacgttaatgtcaattag |
140 |
Q |
| |
|
||||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
28606795 |
tgaaattagaaaggattgccgttacgttaatgccaattag |
28606834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 28636480 - 28636624
Alignment:
| Q |
1 |
atgtgaaaaagatggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttactggagatcaagg |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28636480 |
atgtgaaaaaaatggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttattggagatcaagg |
28636579 |
T |
|
| Q |
101 |
tgaaattcgaaaggattgtcgttacgttaatgtcaattagttata |
145 |
Q |
| |
|
|||||| ||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
28636580 |
tgaaatcagaaaggattgtcgatacgttaatgccaattagatata |
28636624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 28656980 - 28657119
Alignment:
| Q |
7 |
aaaagatggcagctgataatggatacttcaatgaacaattctcaagggctgttcaattgttatcagagaataatcctcttactggagatcaaggtgaaat |
106 |
Q |
| |
|
|||| ||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28656980 |
aaaaaatggcagatgataatggttacttcaatgaccaattctcaagggctgttcttttgttatcagagaataatcctcttattggagatcaaggtgaaat |
28657079 |
T |
|
| Q |
107 |
tcgaaaggattgtcgttacgttaatgtcaattagttatat |
146 |
Q |
| |
|
||||||||||||| | |||||||| ||||||| ||||| |
|
|
| T |
28657080 |
cagaaaggattgtcgcttcgttaatgccaattagatatat |
28657119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University