View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_19 (Length: 349)
Name: NF1988_low_19
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 338
Target Start/End: Complemental strand, 52200952 - 52200644
Alignment:
| Q |
16 |
attacttccacataattaaactgacatttgaattcgaaaaatgtcaaccctaatttgagagccctaatttgagagttgttttatccaaaacacaatacaa |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52200952 |
attacttccacataattaaactgacatttgaattcgaaaaatgtcaaccctaatttgagag--------------ttgttttatccaaaacacaatacaa |
52200867 |
T |
|
| Q |
116 |
ctaatggaaagaacaccaaccactccatatatagtatcagctccacttgttgaattgaagattagagtctagagtcaagagaccccatcctcaccactac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52200866 |
ctaatggaaagaacaccaaccactccatatatagtatcagctccacttgttgaattgaagattagagtctagagtcaagagaccccatcctcaccactac |
52200767 |
T |
|
| Q |
216 |
cacactcaacaatatttgtgagtatatatagacacaattagaaatcagctaaatcaacagtaaactaaatcttccttctaaaacaatcaagatcgccgca |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52200766 |
cacactcaacaatatttgtgagtatatatagacacaattagaaatcagctaaatcaacagtaaactaaatcttccttctaaaacaatcaagatcgccgca |
52200667 |
T |
|
| Q |
316 |
acgccaatggctcgtgcattcat |
338 |
Q |
| |
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||||||||||| ||||||||||| |
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| T |
52200666 |
acgccaatggcccgtgcattcat |
52200644 |
T |
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