View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_20 (Length: 344)
Name: NF1988_low_20
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 9 - 324
Target Start/End: Original strand, 37346360 - 37346675
Alignment:
| Q |
9 |
gaagaatatgagctcacaaggatatcaattgcttgttctatggaaattgttccagtctctgctaaatccatctcaatatcctaacattgaaacatatttc |
108 |
Q |
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| T |
37346360 |
gaagaatatgagctcacaaggatatcaattgcttgttctatggaaattgttccagtctctgataaatccatctcaatatcctaacattgaaacatatttc |
37346459 |
T |
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| Q |
109 |
aaaattatttatatgtttgaatatgttgtaatactaatcatggttactaaatcaacttacctgatcaaaatccttgtttatagttttaagtaaatgatcg |
208 |
Q |
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| T |
37346460 |
aaaatcatttatatgtttgaatatgttgtaatactaatcaatgttactaaatcaacttacctgatcaaaatccttgtttatagttttaagtaaatgatcg |
37346559 |
T |
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| Q |
209 |
gatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattggaacaaaaacagaattaatcactaaatggtcatcaattatatata |
308 |
Q |
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| T |
37346560 |
gatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattggaacaaaaacagaattaatcactaaatggtcatcaattatatata |
37346659 |
T |
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| Q |
309 |
attgaatattaacatt |
324 |
Q |
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| T |
37346660 |
attgaatattaacatt |
37346675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 167 - 314
Target Start/End: Complemental strand, 37343519 - 37343373
Alignment:
| Q |
167 |
acctgatcaaaatccttgtttatagttttaagtaaatgatcggatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattggaa |
266 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || | |||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
37343519 |
acctgatcaaaatccttgtttatagttttaagtaaatgatcagatgggttttggagagaaggacaaggaaatccattaaaagcaaaaa-ctacattggaa |
37343421 |
T |
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| Q |
267 |
caaaaacagaattaatcactaaatggtcatcaattatatataattgaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
37343420 |
caaaaacagaattaatcactaaatggtcatcaattaattataattgaa |
37343373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 166 - 284
Target Start/End: Complemental strand, 37322325 - 37322207
Alignment:
| Q |
166 |
tacctgatcaaaatccttgtttatagttttaagtaaatgatcggatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattgga |
265 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||| ||||| ||||| |||||||||||||||||| | |
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| T |
37322325 |
tacctgatcaaaatccttgtttatagttttaagtaaatgatcagaaggattttgtagaggaggacatggaaatccattcaaagcaaaaaactacattgaa |
37322226 |
T |
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| Q |
266 |
acaaaaacagaattaatca |
284 |
Q |
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||||||||| ||| ||||| |
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| T |
37322225 |
acaaaaacaaaatcaatca |
37322207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 165 - 284
Target Start/End: Complemental strand, 37331302 - 37331183
Alignment:
| Q |
165 |
ttacctgatcaaaatccttgtttatagttttaagtaaatgatcggatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattgg |
264 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||| ||||| |
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| T |
37331302 |
ttacctgatcaaaatccttgtttatagttttaagcaaatgatcagatggattttgtagaggaggacaaggaaatccattcaaagcaaaaaactgcattga |
37331203 |
T |
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| Q |
265 |
aacaaaaacagaattaatca |
284 |
Q |
| |
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||||||| || ||| ||||| |
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| T |
37331202 |
aacaaaagcaaaatcaatca |
37331183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 166 - 284
Target Start/End: Original strand, 19544192 - 19544310
Alignment:
| Q |
166 |
tacctgatcaaaatccttgtttatagttttaagtaaatgatcggatggattttgtaggggaggacaaggaaaaccatttgaagcaaaaaactacattgga |
265 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||| |||||||||||||||| | |
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| T |
19544192 |
tacctgatcaaagtctttgtttatagttttaagtaaatgatcagatgggttttggagaggaggacaaggaaaaccattcattgcaaaaaactacattgaa |
19544291 |
T |
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| Q |
266 |
acaaaaacagaattaatca |
284 |
Q |
| |
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|||||| |||||| ||||| |
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| T |
19544292 |
acaaaaccagaatcaatca |
19544310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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