View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_24 (Length: 324)
Name: NF1988_low_24
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_24 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 42 - 324
Target Start/End: Complemental strand, 29258744 - 29258461
Alignment:
| Q |
42 |
tgtttttgaaaagcatctccaaatacagatgcagttaagttacatgtatgatcaatagggtgattattccaatgatggagaaagttaggatcttcttatt |
141 |
Q |
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| T |
29258744 |
tgtttttcaaaagcatctccaaatacagatgcagttaagttacatgtatgatcaatagggtgactattccaatgatggagaaagttaggatcttcttatt |
29258645 |
T |
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| Q |
142 |
ccctgcaaaatcagaaaacattatactcttgattttt-caaacttagaagagttgcttgcattatgatgtgctcgtgggttttgatgtgaaatgacctta |
240 |
Q |
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| T |
29258644 |
cccagcaaaatcagaaaacattatactcttgattttttcaaacttagaagagttgcttgcattatgatgtgctcgtgggttttcatgtgaaatggcctta |
29258545 |
T |
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| Q |
241 |
ttattgctgatatttttgttatctaatctctataattttgtatgagttattggtttaataattgtcaaccttcctccttgtata |
324 |
Q |
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| T |
29258544 |
ttattgctgatatttttgttatctaatctctataattttgtatgagttattggtttatttattgtcaaccttcctccttgtata |
29258461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 236 - 321
Target Start/End: Original strand, 35234990 - 35235075
Alignment:
| Q |
236 |
ccttattattgctgatatttttgttatctaatctctataattttgtatgagttattggtttaataattgtcaaccttcctccttgt |
321 |
Q |
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| T |
35234990 |
ccttattgttgctgatatttttgttatctgatatctataattttgtatgagttattggtttacttattgccaaccttcttccttgt |
35235075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 237 - 300
Target Start/End: Original strand, 29262294 - 29262360
Alignment:
| Q |
237 |
cttattattgctgatatttttgttatctaatc---tctataattttgtatgagttattggtttaata |
300 |
Q |
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| T |
29262294 |
cttattgttgctgatatttttgttatctaataatatctataattttgtatgagttattggtttaata |
29262360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 321
Target Start/End: Original strand, 29286534 - 29286623
Alignment:
| Q |
231 |
aatgaccttattattgctgatatttttgttatctaatctctataattttgtatgagttattggtttaataattgtcaaccttcctccttgt |
321 |
Q |
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| T |
29286534 |
aatggccttattgttgcggatatttttgttat-tgatatctataattttgcatgagttattggtttacttattgccaaccttcttccttgt |
29286623 |
T |
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