View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_3 (Length: 603)
Name: NF1988_low_3
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 35 - 302
Target Start/End: Original strand, 18639392 - 18639660
Alignment:
| Q |
35 |
atgaaaaacacatcaatatatgaatgataaaaatattaacatagcaaaaatttatagacctagaaagaaataattattaccattgtttgataagtgttaa |
134 |
Q |
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| T |
18639392 |
atgaaaaacacatcaacatatgaatgataaaaatattaacatagcaaaaatttatagacctagaaaaaaataattattaccattgtttgataagtgataa |
18639491 |
T |
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| Q |
135 |
caattagggatgnnnnnnnn-ttggtatccaaagaaatttgcaaataaaattggtcacacactaagcaactaccttaatggatatctgtggataaaataa |
233 |
Q |
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| T |
18639492 |
caattagggatgacaaaaaaattggtatccaaagaaatttgcagataaaattggtcacacactaagcaactatcttaatggatatccgtggataaaataa |
18639591 |
T |
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| Q |
234 |
agagatattttttaatgaataataaacagatattttaaataccttaaacttaatgaatacataggcgac |
302 |
Q |
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| T |
18639592 |
acatatattttttaaggaataataaacagatattttaaataccttaaacttaatgaatacataggcgac |
18639660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 431 - 603
Target Start/End: Original strand, 18639751 - 18639916
Alignment:
| Q |
431 |
aatatgtattcttgtgttggaagtgatgaactttgttttggttagaaatgaaatgtactagtatgaatattattatgttttgataaaaatattga--aat |
528 |
Q |
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| T |
18639751 |
aatatgtattcttgtgttggatgtgatgaactttgttttggttagaaatgaaatgtactagtatgaatattattatgttttgataaaaatattgaataat |
18639850 |
T |
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| Q |
529 |
aaatgtagtgtgttatttgtgttaaattcaaattgaaaggaatgtaatgatcttttgttgttaaattttaaataa |
603 |
Q |
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| T |
18639851 |
aaatgtag---------tgtgttaaattcaaagtgaaatgaatgtaatgatcttttgttgttaaattttaaataa |
18639916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 18639719 - 18639766
Alignment:
| Q |
361 |
cttcaacaaatttagccttaaggagctagaataatatgtattcttgtg |
408 |
Q |
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| T |
18639719 |
cttcaacaaatttagccttaaggagctagaataatatgtattcttgtg |
18639766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 40057257 - 40057217
Alignment:
| Q |
204 |
taccttaatggatatctgtggataaaataaagagatatttt |
244 |
Q |
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| T |
40057257 |
taccttaatggatatctacggataaaataaatagatatttt |
40057217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 519
Target Start/End: Original strand, 27102267 - 27102295
Alignment:
| Q |
491 |
gtatgaatattattatgttttgataaaaa |
519 |
Q |
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| T |
27102267 |
gtatgaatattattatgttttgataaaaa |
27102295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 204 - 244
Target Start/End: Original strand, 13626037 - 13626077
Alignment:
| Q |
204 |
taccttaatggatatctgtggataaaataaagagatatttt |
244 |
Q |
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| T |
13626037 |
taccttaatggatatctatggataaaataaacagatttttt |
13626077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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