View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_32 (Length: 261)
Name: NF1988_low_32
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 40457066 - 40456833
Alignment:
| Q |
10 |
aagaatatgagtacgtactagtaaatactataaattacttttagtttgtattagtattttctaatccttctaatgagaaactattattgtcatggacaaa |
109 |
Q |
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| T |
40457066 |
aagaaaatgagtacgtactagtaaatactataaattacttttagtttgtattagtattttctaatccttctaatgagaaactattattgtcatggacaaa |
40456967 |
T |
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| Q |
110 |
ttaaaggtattatgtgttgaagttcagtttttgtttattttgattcagaatcttgttttattaaagatcaagttatgaaataaatttgattcatagaatg |
209 |
Q |
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| T |
40456966 |
ttaaaggtattatgtgttgaagttcagtttttgtttattttgattcagaatcttattttattaaagatcaagttatgaaataaatttgattcatagaatg |
40456867 |
T |
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| Q |
210 |
aagtaaaagttatagtgtttttgtaggcacgaat |
243 |
Q |
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| T |
40456866 |
aagtaaaagttgtagtgtttttgtaggcacgaat |
40456833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 40362819 - 40362907
Alignment:
| Q |
158 |
aatcttgttttattaaagatcaagttatgaaat-aaatttgattcatagaatgaagtaaaa--gttatagtgtttttgtaggcacgaat |
243 |
Q |
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| T |
40362819 |
aatcttgttttattaaagatcaagttatgtaataaaatttgattaatagaatgaagtaaaaatggtgttgtgcttttgtaggcacgaat |
40362907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 62
Target Start/End: Original strand, 40409487 - 40409539
Alignment:
| Q |
10 |
aagaatatgagtacgtactagtaaatactataaattacttttagtttgtatta |
62 |
Q |
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| T |
40409487 |
aagaaaatgagtacgtactagtgaatactatagattacttttagattgcatta |
40409539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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