View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_38 (Length: 242)
Name: NF1988_low_38
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 231
Target Start/End: Original strand, 30509439 - 30509651
Alignment:
| Q |
19 |
atatcccctagcaaacctgaacagtccagtccccccaactattggcatttctctattttgttcagcaacaggattcctccctaacatgctaagtgtgctc |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30509439 |
atatcccctagcaaacctgaacagtccagtcccaccaactattggcatttctctattttgttcagcaacaggattcctccctaacatgctaagtgtgctc |
30509538 |
T |
|
| Q |
119 |
cctgcatagtttccatctgtgaaaataaaatttgtcaacataaacattccaatatcatgcagagaagcttgaccaaacaacccttgtgctcttccaatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30509539 |
cctgcatagtttccatctgtgaaaataaaatttgtcaacataaacattccaatatcatgcagagaagcttgaccaaacaacccttgtgctcttccaatgt |
30509638 |
T |
|
| Q |
219 |
gctttgaattcat |
231 |
Q |
| |
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|||||||| |||| |
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| T |
30509639 |
gctttgaactcat |
30509651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 231
Target Start/End: Complemental strand, 10971168 - 10970956
Alignment:
| Q |
19 |
atatcccctagcaaacctgaacagtccagtccccccaactattggcatttctctattttgttcagcaacaggattcctccctaacatgctaagtgtgctc |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10971168 |
atatcccctagcaaacctgaacagtccagtcccaccaactattgccatttctctattttgttcagcaacaggattcctccctaacatgctaagtgtgctc |
10971069 |
T |
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| Q |
119 |
cctgcatagtttccatctgtgaaaataaaatttgtcaacataaacattccaatatcatgcagagaagcttgaccaaacaacccttgtgctcttccaatgt |
218 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10971068 |
cctgcatagtttccctctgtgaaaataaaatttgtcaacataaacattccaatatcatgcagagaagcttgaccaaacaacccttgtgctcttccaatgt |
10970969 |
T |
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| Q |
219 |
gctttgaattcat |
231 |
Q |
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|||||||| |||| |
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| T |
10970968 |
gctttgaactcat |
10970956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 13702944 - 13703005
Alignment:
| Q |
44 |
ccagtccccccaactattggcatttctctattttgttcagcaacaggattcctccctaacat |
105 |
Q |
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||||| || ||||| || |||||||||||||||||||||| || ||||||||| || ||||| |
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| T |
13702944 |
ccagttccaccaacaataggcatttctctattttgttcagaaataggattccttcccaacat |
13703005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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