View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_39 (Length: 237)
Name: NF1988_low_39
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 45980037 - 45980248
Alignment:
| Q |
11 |
cacagacaaaggcagcatacttttctgacaaaatagacaactaaatatactcgagaaattaattctaactgaatgtttaagtaatgagacttctatagtc |
110 |
Q |
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| T |
45980037 |
cacagtcaaaggcagcatacttttctgacaaaatagacaactaaatatactcgagaaattaattctaactgaatgtttaagtaatgagacttttgtagtc |
45980136 |
T |
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| Q |
111 |
ataagcttaagattgtggaaatgccaaagaccttataaaaagccacaaataagcgaacatctactttctaacggcaacagagccaagtactaaacatttg |
210 |
Q |
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| T |
45980137 |
ataagcttaagattgtggaaatgccaaagaccttataaaaagccacaaataagcgaacatctactttctaacggcaacagagccaagtactaaacatttg |
45980236 |
T |
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| Q |
211 |
aaatgagtggtt |
222 |
Q |
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|||||||||||| |
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| T |
45980237 |
aaatgagtggtt |
45980248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 99
Target Start/End: Original strand, 45961960 - 45962036
Alignment:
| Q |
21 |
ggcagcatacttttctgacaaaatagacaactaaatatactcgagaaattaattctaactgaatgtttaagtaatgaga |
99 |
Q |
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||||||| | ||||||| |||||||||||||||||| ||| | |||||||||||||| |||||||||| |||||||| |
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| T |
45961960 |
ggcagcacaattttctggcaaaatagacaactaaatc--ctcaaaaaattaattctaacagaatgtttaaataatgaga |
45962036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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