View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1988_low_4 (Length: 535)
Name: NF1988_low_4
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_4 |
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| [»] scaffold0056 (2 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0328 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 93 - 468
Target Start/End: Original strand, 26913511 - 26913886
Alignment:
| Q |
93 |
tgacattcttatattgtacgacatcacatccaacatgactttatttgctatgatctttatttaattttccatgccaatgcattattactatcactcattt |
192 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26913511 |
tgacattattatattgtacaacatcacatccaacatgactttatttgctatgatctttatttaattttccatgccaatgcattattactatcactcattt |
26913610 |
T |
|
| Q |
193 |
ttcatcctcatgtcatcaatgtacaattttccttcaagcttgcgtgagaaatatcctttgaagaaatcttccacgctaatgttgttgaacaccgcaggag |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
26913611 |
ttcatcctcatgtcatcaatgtacaattttccttcaagcttgcgtgagaaatatcctttgaagaaatcttccacactaatgtccttgaacactgcaggag |
26913710 |
T |
|
| Q |
293 |
ttttaggagtaataaggcttggtgctggagcaagaattgcattcaatctagcactgtgaaatgtcgcaatggaaatcctctccttctctgagttaattgt |
392 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
26913711 |
ttttaggagtaataaggcttggtactggagcaagaattgcattcaacctagcactgtgaaatgtggcaatcgaaatcctctccttctctgagttaattgt |
26913810 |
T |
|
| Q |
393 |
tgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaatttaaaatatttactaaaatcaa |
468 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
26913811 |
tgctcgatgttcaatacttcgataaataccattcgtcattatctgtcgaacaatttaaaatatttggtaaaatcaa |
26913886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 466 - 519
Target Start/End: Original strand, 26914115 - 26914168
Alignment:
| Q |
466 |
caactgagctaagctcacaaggacaatcacacacttgattgattataatgtgac |
519 |
Q |
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|
| T |
26914115 |
caactgaactaagctcacgaagacaatcacacacttgattgattataatgtgac |
26914168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 275; Significance: 1e-153; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 93 - 468
Target Start/End: Complemental strand, 21212791 - 21212410
Alignment:
| Q |
93 |
tgacattcttatattgtacgacatcacatccaacatgactttatt------tgctatgatctttatttaattttccatgccaatgcattattactatcac |
186 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||| |||| ||||||||| ||||||||||||||||| |||||||||||||| ||||| |
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| T |
21212791 |
tgacattattatattgtacaccatcacatccaacatgactatattaatatttgctatgatatttatttaattttccatcccaatgcattattaatatcat |
21212692 |
T |
|
| Q |
187 |
tcatttttcatcctcatgtcatcaatgtacaattttccttcaagcttgcgtgagaaatatcctttgaagaaatcttccacgctaatgttgttgaacaccg |
286 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||| | |
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|
| T |
21212691 |
tcttttttcatcctcatgtcatcaatgtacatttttccttcaagctggcgtgagaaatatcctttgaagaaatcttccacactaatgtcgttgaacactg |
21212592 |
T |
|
| Q |
287 |
caggagttttaggagtaataaggcttggtgctggagcaagaattgcattcaatctagcactgtgaaatgtcgcaatggaaatcctctccttctctgagtt |
386 |
Q |
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|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21212591 |
caggggttttaggagtaataaggcttggaactggagcaagaattgcattcaatctagcactgtgaaatgtggcaatggaaatcctctccttctctgagtt |
21212492 |
T |
|
| Q |
387 |
aattgttgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaatttaaaatatttactaaaatcaa |
468 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21212491 |
aatcgttgctcgatgttcaatacttcgataaataccattcgtcattatctgtcaaacaatttaaaatatttgctaaaatcaa |
21212410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 346 - 450
Target Start/End: Complemental strand, 22929428 - 22929324
Alignment:
| Q |
346 |
ctgtgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaa |
445 |
Q |
| |
|
|||||||||| || | |||||||||||| ||||| ||||||| ||||||||| ||||| ||||| |||||||| || || || ||||||||| |||| | |
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|
| T |
22929428 |
ctgtgaaatgctgctacggaaatcctctctttctccgagttaactgttgctcgatgttcgatactccgataaattccgttggtgattatctgtaaaacca |
22929329 |
T |
|
| Q |
446 |
tttaa |
450 |
Q |
| |
|
||||| |
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|
| T |
22929328 |
tttaa |
22929324 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 425
Target Start/End: Original strand, 23021629 - 23021695
Alignment:
| Q |
359 |
caatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccatt |
425 |
Q |
| |
|
|||| ||||||||||| |||| |||||||||||| ||||| ||||| || ||||||||||| ||||| |
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| T |
23021629 |
caatagaaatcctctctttctttgagttaattgtagctcgatgttcgatgcttcgataaattccatt |
23021695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 453
Target Start/End: Complemental strand, 22933793 - 22933689
Alignment:
| Q |
349 |
tgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaattt |
448 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| ||| || | | || |||| || ||||| ||||| ||||| |||||||| | ||||||| ||| |||| |
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| T |
22933793 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccattcgtaaatatctgtaaaaggattt |
22933694 |
T |
|
| Q |
449 |
aaaat |
453 |
Q |
| |
|
||||| |
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|
| T |
22933693 |
aaaat |
22933689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 413
Target Start/End: Complemental strand, 21250989 - 21250925
Alignment:
| Q |
349 |
tgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcg |
413 |
Q |
| |
|
||||||| |||||||||||||| || || ||||| |||| ||||||||| |||||||| ||||| |
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|
| T |
21250989 |
tgaaatgcagcaatggaaatcctttctttttctgaattaactgttgctcgatgttcaatgcttcg |
21250925 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 21264827 - 21264755
Alignment:
| Q |
346 |
ctgtgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaa |
418 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |||||| | || ||||| ||||| || |||||||||| |
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|
| T |
21264827 |
ctgtgaaatgatgcaatggaaatcctctctttctttgagttcaccgtagctcgatgttcgatgcttcgataaa |
21264755 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 143; Significance: 7e-75; HSPs: 2)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 190 - 468
Target Start/End: Original strand, 61907 - 62185
Alignment:
| Q |
190 |
tttttcatcctcatgtcatcaatgtacaattttccttcaagcttgcgtgagaaatatcctttgaagaaatcttccacgctaatgttgttgaacaccgcag |
289 |
Q |
| |
|
|||| |||||||||| ||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||| | || || |||||||| || | |
|
|
| T |
61907 |
ttttccatcctcatgacatcaatgtgtgattttccttcaagcttgcgtgagaaatatgctttaaagaaatcttccactccaacattattgaacactgctg |
62006 |
T |
|
| Q |
290 |
gagttttaggagtaataaggcttggtgctggagcaagaattgcattcaatctagcactgtgaaatgtcgcaatggaaatcctctccttctctgagttaat |
389 |
Q |
| |
|
| ||| |||||| | |||||||||||||||| |||||||||||||| |||| |||||| |||||| ||||||||||||||||| || |||| |||||| |
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|
| T |
62007 |
ggctttcaggagtgacaaggcttggtgctggacaaagaattgcattcagtctaccactgttaaatgtggcaatggaaatcctctctttttctgcgttaat |
62106 |
T |
|
| Q |
390 |
tgttgctcggtgttcaatacttcgataaataccattcgtcattatctgtcaaacaatttaaaatatttactaaaatcaa |
468 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || | |||| || ||||||| |
|
|
| T |
62107 |
tgttgctcgatgttcaatacttcgataaataccattcgtcattatctgtcaaacaattcaacaaatttgcttaaatcaa |
62185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 61824 - 61864
Alignment:
| Q |
124 |
aacatgactttatttgctatgatctttatttaattttccat |
164 |
Q |
| |
|
||||||||| ||||||| || |||||||||||||||||||| |
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| T |
61824 |
aacatgactatatttgccataatctttatttaattttccat |
61864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 346 - 437
Target Start/End: Original strand, 22517 - 22608
Alignment:
| Q |
346 |
ctgtgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccattcgtcattatctg |
437 |
Q |
| |
|
|||||||||| ||||||||||||||| | |||||||| |||| || ||||| |||||||| ||||||||||| ||||| |||| |||||| |
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|
| T |
22517 |
ctgtgaaatgcagcaatggaaatcctcgctttctctgaattaaccgtagctcgatgttcaatgcttcgataaattccatttgtcaatatctg |
22608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 349 - 437
Target Start/End: Complemental strand, 9869 - 9781
Alignment:
| Q |
349 |
tgaaatgtcgcaatggaaatcctctccttctctgagttaattgttgctcggtgttcaatacttcgataaataccattcgtcattatctg |
437 |
Q |
| |
|
|||||||| || || || |||||||||||| |||| || | ||||||||| ||||||||||||| ||||| ||||| |||| |||||| |
|
|
| T |
9869 |
tgaaatgtagccatagatatcctctccttcactgaattcactgttgctcgatgttcaatacttctgtaaattccattggtcaatatctg |
9781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 493
Target Start/End: Original strand, 3612224 - 3612253
Alignment:
| Q |
464 |
atcaactgagctaagctcacaaggacaatc |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
3612224 |
atcaactgagctaagctcacaaggacaatc |
3612253 |
T |
|
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