View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1988_low_43 (Length: 221)

Name: NF1988_low_43
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1988_low_43
NF1988_low_43
[»] chr6 (15 HSPs)
chr6 (9-206)||(16870317-16870514)
chr6 (115-206)||(16558594-16558686)
chr6 (115-206)||(16655619-16655710)
chr6 (9-118)||(17095659-17095768)
chr6 (9-68)||(16655782-16655841)
chr6 (9-66)||(16784994-16785051)
chr6 (9-66)||(16778898-16778955)
chr6 (15-72)||(16794926-16794983)
chr6 (121-207)||(17067026-17067112)
chr6 (45-118)||(16985117-16985190)
chr6 (9-68)||(16558465-16558522)
chr6 (9-72)||(17067197-17067260)
chr6 (17-66)||(16841550-16841599)
chr6 (17-71)||(18808572-18808626)
chr6 (17-66)||(16836439-16836488)
[»] chr3 (2 HSPs)
chr3 (17-118)||(7055669-7055770)
chr3 (9-72)||(38941733-38941796)
[»] scaffold0256 (1 HSPs)
scaffold0256 (9-66)||(6881-6938)
[»] scaffold0133 (4 HSPs)
scaffold0133 (9-66)||(6222-6279)
scaffold0133 (9-69)||(10567-10627)
scaffold0133 (27-72)||(15861-15906)
scaffold0133 (152-207)||(6068-6120)
[»] chr8 (1 HSPs)
chr8 (17-118)||(13375746-13375853)
[»] chr2 (1 HSPs)
chr2 (20-69)||(20151580-20151629)
[»] scaffold0511 (1 HSPs)
scaffold0511 (17-71)||(3550-3604)
[»] scaffold0230 (1 HSPs)
scaffold0230 (17-71)||(2396-2450)
[»] scaffold0144 (1 HSPs)
scaffold0144 (17-69)||(4188-4240)


Alignment Details
Target: chr6 (Bit Score: 194; Significance: 1e-105; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 206
Target Start/End: Original strand, 16870317 - 16870514
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16870317 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggt 16870416  T
Q  109 aatttaatttgattcctttgtcttttgtgttactataatataaaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16870417 aatttaatttgattcctttgtcttttgtgttactataatataaaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatat 16870514  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 115 - 206
Target Start/End: Original strand, 16558594 - 16558686
Alignment:
Q  115 atttgattcctttgtcttttgtgttactataatataaaa-ttagatggtgtgattatagacttattatattgaacaatgtgtgcagataatat 206  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16558594 atttgattcctttgtcttttgtgttactataatataaaaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatat 16558686  T

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Target: chr6; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 115 - 206
Target Start/End: Complemental strand, 16655710 - 16655619
Alignment:
Q  115 atttgattcctttgtcttttgtgttactataatataaaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatat 206  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16655710 atttgattcctttgtcttttgtgttactataatatcaaatcagatggtgtgattatagacttattatattgaacaatgtgtgcagataatat 16655619  T

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Target: chr6; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 17095768 - 17095659
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggt 108  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||  ||||||||||||| |||||    
T  17095768 ggagaagagatgtaagagaggaataggtgaagattggcattagatagctcacattcctgaatttgaattggaaactgatgcaaaaccaacatttcgtggt 17095669  T
Q  109 aatttaattt 118  Q
    ||||||||||    
T  17095668 aatttaattt 17095659  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 16655841 - 16655782
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctga 68  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16655841 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctga 16655782  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 16785051 - 16784994
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 66  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16785051 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 16784994  T

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Target: chr6; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 16778955 - 16778898
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 66  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  16778955 ggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcct 16778898  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 16794983 - 16794926
Alignment:
Q  15 gagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattt 72  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  16794983 gagatgcaagagaggaaaaggtgaagattggcataagatagctcacgttcctgaattt 16794926  T

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Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 121 - 207
Target Start/End: Complemental strand, 17067112 - 17067026
Alignment:
Q  121 ttcctttgtcttttgtgttactataatataaaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatatt 207  Q
    ||||||| | |||||| ||||||||  ||||||||| ||  ||||||| ||||||||||||||||||||||||||||||| ||||||    
T  17067112 ttcctttcttttttgtcttactatagaataaaattatatactgtgattttagacttattatattgaacaatgtgtgcagagaatatt 17067026  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 118
Target Start/End: Complemental strand, 16985190 - 16985117
Alignment:
Q  45 gcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggtaatttaattt 118  Q
    ||||||||||||||||||||||||||||||||| ||||||| |  ||||||||||||   ||||||||||||||    
T  16985190 gcataagatagctcacattcctgaattttattttgaatctggtgcaaaaccaacattccctggtaatttaattt 16985117  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 16558465 - 16558522
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctga 68  Q
    |||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  16558465 ggagaagagatgcaagag--gaataggtgacgattggcataagatagctcacattcctga 16558522  T

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Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 17067260 - 17067197
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattt 72  Q
    |||| ||||||  |||| ||||| |||||||||||||||||| |||||||||||||||||||||    
T  17067260 ggagaagagattgaagataggaaaaggtgaagattggcataaaatagctcacattcctgaattt 17067197  T

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Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 16841599 - 16841550
Alignment:
Q  17 gatgcaagagaggaataggtgaagattggcataagatagctcacattcct 66  Q
    ||||||||| || || ||| ||||||||||||||||||||||||||||||    
T  16841599 gatgcaagaaagaaacaggggaagattggcataagatagctcacattcct 16841550  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 18808572 - 18808626
Alignment:
Q  17 gatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaatt 71  Q
    ||||||||| |||||  || ||||||||||| |||||||||||| ||||||||||    
T  18808572 gatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcctgaatt 18808626  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 16836488 - 16836439
Alignment:
Q  17 gatgcaagagaggaataggtgaagattggcataagatagctcacattcct 66  Q
    ||||||||| || || ||| ||||||||||| ||||||||||||||||||    
T  16836488 gatgcaagaaagaaacaggggaagattggcacaagatagctcacattcct 16836439  T

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Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 118
Target Start/End: Original strand, 7055669 - 7055770
Alignment:
Q  17 gatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggtaatttaat 116  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| | |||    ||||||||||||  |||| || |||||||||||||||||||    
T  7055669 gatgcaagagaggagtaggtgaagattggcataagatagctcacattccggcattgatattggaatctgatgcaaaaacatcattttgtggtaatttaat 7055768  T
Q  117 tt 118  Q
    ||    
T  7055769 tt 7055770  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 38941733 - 38941796
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattt 72  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38941733 ggagaagagatgcaagagaggaaaaggtgaagattggcataagatagctcacattcctgaattt 38941796  T

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Target: scaffold0256 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 6938 - 6881
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 66  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6938 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 6881  T

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Target: scaffold0133 (Bit Score: 54; Significance: 4e-22; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 6279 - 6222
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 66  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6279 ggagaagagatgcaagagaggaataggtgaagattggcataagatagctcacattcct 6222  T

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Target: scaffold0133; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 10627 - 10567
Alignment:
Q  9 ggagcagagatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaa 69  Q
    |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  10627 ggagaagagatgcaagagaggtataggtgaagattggcataagatagctcacattcctgaa 10567  T

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Target: scaffold0133; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 15906 - 15861
Alignment:
Q  27 aggaataggtgaagattggcataagatagctcacattcctgaattt 72  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||    
T  15906 aggaaaaggtgaagattggcataagatagctcacattcctcaattt 15861  T

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Target: scaffold0133; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 152 - 207
Target Start/End: Complemental strand, 6120 - 6068
Alignment:
Q  152 aattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatatt 207  Q
    ||||| ||||||||||| |||||||||   ||||||||||||||||||| ||||||    
T  6120 aattatatggtgtgattttagacttat---attgaacaatgtgtgcagagaatatt 6068  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 13375853 - 13375746
Alignment:
Q  17 gatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaattttatttggaatc------tgataaaaaaccaacattttgtggtaa 110  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||| |||||| || | ||||||||      ||||  |||||||||||||||||||||    
T  13375853 gatgcaagagaggaataggagaagattgggataagatagctcacatacctgaagttgaattggaatctaaatttgatgcaaaaccaacattttgtggtaa 13375754  T
Q  111 tttaattt 118  Q
    ||||||||    
T  13375753 tttaattt 13375746  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 20151629 - 20151580
Alignment:
Q  20 gcaagagaggaataggtgaagattggcataagatagctcacattcctgaa 69  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20151629 gcaagagaggaataggtgaagattggcataagatagctaacattcctgaa 20151580  T

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Target: scaffold0511 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Original strand, 3550 - 3604
Alignment:
Q  17 gatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaatt 71  Q
    ||||||||| |||||  || ||||||||||| |||||||||||| ||||||||||    
T  3550 gatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcctgaatt 3604  T

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Target: scaffold0230 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 2450 - 2396
Alignment:
Q  17 gatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaatt 71  Q
    ||||||||| |||||  || ||||||||||| |||||||||||| ||||||||||    
T  2450 gatgcaagaaaggaactggggaagattggcaaaagatagctcacgttcctgaatt 2396  T

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Target: scaffold0144 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0144
Description:

Target: scaffold0144; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 4188 - 4240
Alignment:
Q  17 gatgcaagagaggaataggtgaagattggcataagatagctcacattcctgaa 69  Q
    ||||||||| |||||  || |||||||||||||||||| ||||| ||||||||    
T  4188 gatgcaagaaaggaaccggggaagattggcataagatatctcacgttcctgaa 4240  T

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