View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_46 (Length: 215)
Name: NF1988_low_46
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_46 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 42219916 - 42219766
Alignment:
| Q |
64 |
ccacgcccgaaccaccaaactcctaagagggccaacaaaatcctacctttactccaaatcataatacagtccaagaaacacatgaatcaacgagaaagaa |
163 |
Q |
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| T |
42219916 |
ccacgcccgaaccaccaaactcctaagagggccaacaaaatcctacctttactccaaatcataatacagtccaagaaacacatgaatcaacgagaaagaa |
42219817 |
T |
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| Q |
164 |
cccaaccaaaaactcacaaaagagaataacagctctatatatcccctatcg |
214 |
Q |
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| T |
42219816 |
cccaaccaaaaactcacaaaagagaattacagctctatatatcccctatcg |
42219766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 47
Target Start/End: Complemental strand, 42219954 - 42219916
Alignment:
| Q |
9 |
ttccaaaaccctctcatcctctcaaaactctcaatcaac |
47 |
Q |
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| T |
42219954 |
ttccaaaaccctctcatcccctcaaaactctcaatcaac |
42219916 |
T |
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