View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_48 (Length: 202)
Name: NF1988_low_48
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 19 - 182
Target Start/End: Complemental strand, 36027594 - 36027431
Alignment:
| Q |
19 |
acaaaagaaaaactagatatatataaaattcacttatttatgtcatattagagaaaaaacgatgtaaatgttgaatctctaattgtttgttcaataaaaa |
118 |
Q |
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| T |
36027594 |
acaaaagaaaaactagatatatatgaaattcacttatttatgtcatattagagaaaaaacgatgtaaatgttcaatctctaattgtttgttcaataaaaa |
36027495 |
T |
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| Q |
119 |
agtgtatgttcggtattatagtaggtttgtcgaaatcgattgaacacctaaaagaatatctagt |
182 |
Q |
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| T |
36027494 |
agtgtatgttcggtattatagtaggtttgtcgaaatcgattcaacacctaaaaaaatatctagt |
36027431 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 5078531 - 5078571
Alignment:
| Q |
18 |
cacaaaagaaaaactagatatatataaaattcacttattta |
58 |
Q |
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| T |
5078531 |
cacaaaagaaaaacttgatatatgtaaaaatcacttattta |
5078571 |
T |
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