View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1988_low_6 (Length: 463)

Name: NF1988_low_6
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1988_low_6
NF1988_low_6
[»] chr2 (5 HSPs)
chr2 (16-454)||(8020550-8020988)
chr2 (101-178)||(22965011-22965088)
chr2 (101-178)||(22399511-22399588)
chr2 (404-459)||(22400494-22400550)
chr2 (404-459)||(22791940-22791996)
[»] chr3 (33 HSPs)
chr3 (258-443)||(28151610-28151795)
chr3 (20-178)||(28150871-28151026)
chr3 (17-173)||(28003117-28003270)
chr3 (16-128)||(27979426-27979538)
chr3 (319-443)||(17744491-17744615)
chr3 (319-443)||(19045811-19045935)
chr3 (272-443)||(28037413-28037584)
chr3 (16-127)||(27919306-27919414)
chr3 (273-443)||(11420963-11421133)
chr3 (301-443)||(28149970-28150112)
chr3 (16-170)||(27459906-27460057)
chr3 (177-265)||(28151276-28151364)
chr3 (318-443)||(27954347-27954471)
chr3 (300-396)||(27458885-27458981)
chr3 (347-443)||(28161925-28162021)
chr3 (318-437)||(8539262-8539381)
chr3 (16-96)||(17745559-17745639)
chr3 (16-96)||(19046879-19046959)
chr3 (347-443)||(28185968-28186064)
chr3 (318-443)||(27920262-27920389)
chr3 (16-159)||(11419935-11420075)
chr3 (301-410)||(27776525-27776634)
chr3 (25-97)||(28036380-28036452)
chr3 (366-443)||(28479860-28479937)
chr3 (366-443)||(28509043-28509120)
chr3 (301-366)||(28056547-28056612)
chr3 (301-366)||(28066972-28067037)
chr3 (96-168)||(26236438-26236510)
chr3 (180-231)||(28054960-28055011)
chr3 (180-231)||(28065385-28065436)
chr3 (179-231)||(8539704-8539756)
chr3 (183-231)||(28149203-28149251)
chr3 (237-265)||(28161470-28161498)
[»] scaffold0257 (2 HSPs)
scaffold0257 (300-440)||(19079-19219)
scaffold0257 (185-231)||(18626-18672)
[»] chr4 (3 HSPs)
chr4 (16-59)||(18010729-18010772)
chr4 (237-265)||(9328792-9328820)
chr4 (237-265)||(9382569-9382597)
[»] scaffold0922 (1 HSPs)
scaffold0922 (377-443)||(1819-1885)


Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 454
Target Start/End: Original strand, 8020550 - 8020988
Alignment:
Q  16 cagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020550 cagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaatt 8020649  T
Q  116 caaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatttcttgtattcttttttacactttgtcaataccggaat 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  8020650 caaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatttcttgtattcttttttacactttgtcagtaccggaat 8020749  T
Q  216 tgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaaagagcaatagcttctacttcaatcgccataacaaagcctc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8020750 tgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaaagagctatagcttctacttcaatcgccataacaaagcctc 8020849  T
Q  316 taaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020850 taaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagtt 8020949  T
Q  416 acctcatcgcccttttcattttgaagttaaccttcttct 454  Q
    | |||||||||||||||||||||||||||||||||||||    
T  8020950 atctcatcgcccttttcattttgaagttaaccttcttct 8020988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 22965011 - 22965088
Alignment:
Q  101 tattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 178  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||| |||||| ||||||||||||||||||||||| ||||    
T  22965011 tattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttcgatattcctctccaaatatatacttatt 22965088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 22399511 - 22399588
Alignment:
Q  101 tattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 178  Q
    ||||||||||||||||| ||||||| |||||||| ||| ||| ||||||  |||||||||||||||||||||| ||||    
T  22399511 tattaccaacaaattcagaagtaatatgaaggccgtgtcaaattcacttctatattcctctccaaatatatacttatt 22399588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 459
Target Start/End: Original strand, 22400494 - 22400550
Alignment:
Q  404 ttttcttaagttacctcatcgcccttttcattttgaagttaacct-tcttctctctc 459  Q
    |||||||| ||||||||||  ||||||| ||||||||||||| || |||||||||||    
T  22400494 ttttcttatgttacctcataacccttttgattttgaagttaaactctcttctctctc 22400550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 459
Target Start/End: Original strand, 22791940 - 22791996
Alignment:
Q  404 ttttcttaagttacctcatcgcccttttcattttgaagttaacct-tcttctctctc 459  Q
    |||||||| ||||||||||  ||||||| ||||||||||||| || |||||||||||    
T  22791940 ttttcttatgttacctcataacccttttgattttgaagttaaactctcttctctctc 22791996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 1e-76; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 258 - 443
Target Start/End: Original strand, 28151610 - 28151795
Alignment:
Q  258 gaagaaggtgacaaccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaacta 357  Q
    ||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28151610 gaagaaggtgacaaccaaagagcaatagcttatactccaattgacataacaaagcctgtaaccactcaagatgttgatgttgaaatctggcaggaaacta 28151709  T
Q  358 gtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 443  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  28151710 gtaacactaatgatgatcaaggtgaagaatctttggatcgcttttattttcttaagttacctcatcgccctttttattttgaagtt 28151795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 28150871 - 28151026
Alignment:
Q  20 aagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattcaaa 119  Q
    |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||   ||||||||||||||    
T  28150871 aagaaatggaacaaacactagagacaaagcatgaatttgttgaaaatgttcctcaacaagagatgccatcagtagcaataata---ccaacaaattcaaa 28150967  T
Q  120 agtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28150968 agtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatacatatt 28151026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 28003117 - 28003270
Alignment:
Q  17 agaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaattc 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||   |||||  ||||||||||||    
T  28003117 agaaagaaatggaacaaacactagagacagagcatgaatttgttgaaaatgtccctcatcaagagatgccatcagtag---caataaaaccaacaaattc 28003213  T
Q  117 aaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatatatac 173  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  28003214 aaaagtaatttgaaggccatgtgaaaatcacttggataatcctctcccaatatatac 28003270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 16 - 128
Target Start/End: Original strand, 27979426 - 27979538
Alignment:
Q  16 cagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaatt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  27979426 cagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaaatgttcctcaacaagacatgccatcagtagcaacaatattaccaacaaatt 27979525  T
Q  116 caaaagtaatttg 128  Q
    | |||||||||||    
T  27979526 cgaaagtaatttg 27979538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 319 - 443
Target Start/End: Complemental strand, 17744615 - 17744491
Alignment:
Q  319 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 418  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  17744615 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 17744516  T
Q  419 tcatcgcccttttcattttgaagtt 443  Q
    ||||||| |||||||||||||||||    
T  17744515 tcatcgctcttttcattttgaagtt 17744491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 319 - 443
Target Start/End: Complemental strand, 19045935 - 19045811
Alignment:
Q  319 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 418  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  19045935 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 19045836  T
Q  419 tcatcgcccttttcattttgaagtt 443  Q
    ||||||| |||||||||||||||||    
T  19045835 tcatcgctcttttcattttgaagtt 19045811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 272 - 443
Target Start/End: Original strand, 28037413 - 28037584
Alignment:
Q  272 ccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgac 371  Q
    ||||||||| ||||||||| |||||||  |||||||||||||| | |||||| ||||||||||| |  ||| |||||  ||||||||||||||||||||     
T  28037413 ccaaagagccatagcttctccttcaattaccataacaaagcctgttaccactgaagatgttgatctcaaaaactggcgcgaaactagtaacactaatgat 28037512  T
Q  372 gatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 443  Q
    | || |||| |||| |||||||||| || || |||||| ||||||||||||| |||||||||||||||||||    
T  28037513 ggtcaaggtaaagactctttggatcagtgttattttctaaagttacctcatcacccttttcattttgaagtt 28037584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 27919306 - 27919414
Alignment:
Q  16 cagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaatt 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||   ||||| ||||||||||||    
T  27919306 cagaaagaaatagaacaaacactagagacagagcatgaatttgttgaaaatgttcctcaacaaaagatgccatcagtag---caataataccaacaaatt 27919402  T
Q  116 caaaagtaattt 127  Q
    || |||||||||    
T  27919403 cagaagtaattt 27919414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 273 - 443
Target Start/End: Original strand, 11420963 - 11421133
Alignment:
Q  273 caaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacg 372  Q
    |||| ||| ||||||||| ||  ||| |||||||||||||||   |||| |||||||||||||||| ||||||| ||||||||||||||  ||||||| |    
T  11420963 caaatagccatagcttctcctcaaattgccataacaaagcctgctaccattcaagatgttgatgttaaaatctgtcaggaaactagtaaggctaatgatg 11421062  T
Q  373 atcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 443  Q
    ||| |||||| || |||||||||| ||||| ||||||||||||||  |||| |||||||||||| ||||||    
T  11421063 atcaaggtgatgactctttggatcagttttattttcttaagttacgacatcacccttttcatttagaagtt 11421133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 301 - 443
Target Start/End: Original strand, 28149970 - 28150112
Alignment:
Q  301 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 400  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || |||||||||||||||||||||||| |||| ||||||||| |||| |||||  ||    
T  28149970 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacactaatgatgatcaaggtgaagagtcttaggatcaatt 28150069  T
Q  401 ttcttttcttaagttacctcatcgcccttttcattttgaagtt 443  Q
    || ||||||||||||| |||||| |||||||||||||||||||    
T  28150070 ttattttcttaagttatctcatcacccttttcattttgaagtt 28150112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 27460057 - 27459906
Alignment:
Q  16 cagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaatt 115  Q
    |||||||||||||||||| |||| ||||||| ||||||||||| ||||| |||||||||| | ||||||||||||||||||||||   |||||||| | |    
T  27460057 cagaaagaaatggaacaaccacttgagacagggcatgaatttgatgaaaatgttcctcaaaaggagatgccatcagtagcaacaa---taccaacagact 27459961  T
Q  116 caaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaatata 170  Q
    || ||||||| || |||||||||  || || |||| |||||| ||||||||||||    
T  27459960 cagaagtaatgtgcaggccatgtcgaagtcccttgcatattcatctccaaatata 27459906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 28151276 - 28151364
Alignment:
Q  177 tttcttgtattcttttttacactttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaagg 265  Q
    ||||||||||||||||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28151276 tttcttgtattctttttcacactttgtcagtacagaaattgaattatactacaatattgacaggttagcgaaataagtgttgaagaagg 28151364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 318 - 443
Target Start/End: Original strand, 27954347 - 27954471
Alignment:
Q  318 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 417  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||||||    
T  27954347 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagttac 27954446  T
Q  418 ctcatcgcccttttcattttgaagtt 443  Q
    ||||||  ||||||||||||||||||    
T  27954447 ctcatc-accttttcattttgaagtt 27954471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 300 - 396
Target Start/End: Complemental strand, 27458981 - 27458885
Alignment:
Q  300 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatc 396  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||| || |||| ||||||||| ||||||||||    
T  27458981 gccataacaaagcctcttaccactcaagatgttgatgttaaaatctggcaggaaactagcaagactaaggatgatcaaggtgaagactctttggatc 27458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 347 - 443
Target Start/End: Original strand, 28161925 - 28162021
Alignment:
Q  347 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 443  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| |||||||||||||||||||    
T  28161925 gcaggaaactagtaacactaatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtt 28162021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 318 - 437
Target Start/End: Complemental strand, 8539381 - 8539262
Alignment:
Q  318 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 417  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||    ||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  8539381 accactcaagatgttgatgttaaactttggcaggaaactagtaacactaatattaatcaaggtgaagaatccttggatcagttttattttcttaagttac 8539282  T
Q  418 ctcatcgcccttttcatttt 437  Q
    ||  || |||||||||||||    
T  8539281 cttgtcacccttttcatttt 8539262  T

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Target: chr3; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 17745639 - 17745559
Alignment:
Q  16 cagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagca 96  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||    
T  17745639 cagaaagaaatggaacaaacaatagagacagagcatgaatttgttgaaaatgttcctcgacgagaaatgccatcagtagca 17745559  T

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Target: chr3; HSP #18
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 19046959 - 19046879
Alignment:
Q  16 cagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagca 96  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||    
T  19046959 cagaaagaaatggaacaaacaatagagacagagcatgaatttgttgaaaatgttcctcgacgagaaatgccatcagtagca 19046879  T

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Target: chr3; HSP #19
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 347 - 443
Target Start/End: Original strand, 28185968 - 28186064
Alignment:
Q  347 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 443  Q
    ||||||||||||||||||| |||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| |||||||||||||||||||    
T  28185968 gcaggaaactagtaacactgatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtt 28186064  T

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Target: chr3; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 318 - 443
Target Start/End: Original strand, 27920262 - 27920389
Alignment:
Q  318 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaag---t 414  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||   |    
T  27920262 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagcaat 27920361  T
Q  415 tacctcatcgcccttttcattttgaagtt 443  Q
    |||||||||  ||||||||||||||||||    
T  27920362 tacctcatc-accttttcattttgaagtt 27920389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 159
Target Start/End: Original strand, 11419935 - 11420075
Alignment:
Q  16 cagaaagaaatggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaacaatattaccaacaaatt 115  Q
    ||||||||||| | ||||||||||| ||||||||||| ||||||||||| ||||||||  || ||||| |||||| |||   ||||| ||||||||||||    
T  11419935 cagaaagaaattggacaaacactagtgacagagcatggatttgttgaaaatgttcctcgtcatgagattccatcaatag---caataataccaacaaatt 11420031  T
Q  116 caaaagtaatttgaaggccatgtgaaaatcacttggatattcct 159  Q
    || |||||||||  | |||| || |||||| |||| ||||||||    
T  11420032 cagaagtaattttcaagccacgtcaaaatctcttgcatattcct 11420075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 301 - 410
Target Start/End: Original strand, 27776525 - 27776634
Alignment:
Q  301 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 400  Q
    |||||||||||||||  || |||||||||||||||||||||| || ||||||||||||||| ||||||||  ||| ||||||| | ||||||||||  ||    
T  27776525 ccataacaaagcctcctactactcaagatgttgatgttgaaaacttgcaggaaactagtaagactaatgatcatcaaggtgaaaactctttggatcaatt 27776624  T
Q  401 ttcttttctt 410  Q
    || |||||||    
T  27776625 ttattttctt 27776634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 25 - 97
Target Start/End: Original strand, 28036380 - 28036452
Alignment:
Q  25 atggaacaaacactagagacagagcatgaatttgttgaaattgttcctcaacaagagatgccatcagtagcaa 97  Q
    |||||| ||||||||||||||||||||||||||||||||| | | ||||   |||||||||||||||||||||    
T  28036380 atggaagaaacactagagacagagcatgaatttgttgaaaatttccctcgtgaagagatgccatcagtagcaa 28036452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 28479937 - 28479860
Alignment:
Q  366 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 443  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  28479937 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtt 28479860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 366 - 443
Target Start/End: Complemental strand, 28509120 - 28509043
Alignment:
Q  366 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 443  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  28509120 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtt 28509043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 28056547 - 28056612
Alignment:
Q  301 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 366  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28056547 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28056612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 28066972 - 28067037
Alignment:
Q  301 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 366  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28066972 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28067037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 26236510 - 26236438
Alignment:
Q  96 aacaatattaccaacaaattcaaaagtaatttgaaggccatgtgaaaatcacttggatattcctctccaaata 168  Q
    |||| ||||||||||||||| | |||||||||| || |||||| ||| || | |||| |||||||||||||||    
T  26236510 aacattattaccaacaaattaagaagtaatttgtagaccatgtaaaattcccatggaaattcctctccaaata 26236438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 28054960 - 28055011
Alignment:
Q  180 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 231  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28054960 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28055011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 28065385 - 28065436
Alignment:
Q  180 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 231  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28065385 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28065436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 8539756 - 8539704
Alignment:
Q  179 tcttgtattcttttttacactttgtcaataccggaattgaattataccacaat 231  Q
    ||||||||||||||| |||||||  |||| | ||||||||||||||| |||||    
T  8539756 tcttgtattctttttaacacttttccaatgcaggaattgaattatactacaat 8539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 231
Target Start/End: Original strand, 28149203 - 28149251
Alignment:
Q  183 gtattcttttttacactttgtcaataccggaattgaattataccacaat 231  Q
    ||||||||||  ||||||||||||| | ||||||||||||||| |||||    
T  28149203 gtattcttttgaacactttgtcaatgcaggaattgaattatactacaat 28149251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 28161470 - 28161498
Alignment:
Q  237 caggttagcgaaataagtgttgaagaagg 265  Q
    |||||||||||||||||||||||||||||    
T  28161470 caggttagcgaaataagtgttgaagaagg 28161498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 81; Significance: 6e-38; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 300 - 440
Target Start/End: Original strand, 19079 - 19219
Alignment:
Q  300 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggt 399  Q
    ||||||||||||||||| ||||||||||||||||||||| | | || ||||||||||||||||| || ||| |||| ||||||||| ||||||||||  |    
T  19079 gccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaat 19178  T
Q  400 tttcttttcttaagttacctcatcgcccttttcattttgaa 440  Q
     || |||||||||||||||||||| ||||||||||||||||    
T  19179 attattttcttaagttacctcatcacccttttcattttgaa 19219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 18626 - 18672
Alignment:
Q  185 attcttttttacactttgtcaataccggaattgaattataccacaat 231  Q
    ||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  18626 attctttttgacactttgtcaatgcaggaattgaattatactacaat 18672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 18010729 - 18010772
Alignment:
Q  16 cagaaagaaatggaacaaacactagagacagagcatgaatttgt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  18010729 cagaaagaaatggaacaaacactagagacagagcatgaatttgt 18010772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 9328820 - 9328792
Alignment:
Q  237 caggttagcgaaataagtgttgaagaagg 265  Q
    |||||||||||||||||||||||||||||    
T  9328820 caggttagcgaaataagtgttgaagaagg 9328792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 9382597 - 9382569
Alignment:
Q  237 caggttagcgaaataagtgttgaagaagg 265  Q
    |||||||||||||||||||||||||||||    
T  9382597 caggttagcgaaataagtgttgaagaagg 9382569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 377 - 443
Target Start/End: Original strand, 1819 - 1885
Alignment:
Q  377 aggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 443  Q
    ||||||||| | |||  ||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  1819 aggtgaagagtatttcaatcggttttattttcttaagttaccacatcacccttttcattttgaagtt 1885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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