View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1988_low_9 (Length: 409)
Name: NF1988_low_9
Description: NF1988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1988_low_9 |
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| [»] chr4 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Complemental strand, 37347032 - 37346641
Alignment:
| Q |
18 |
agaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttccattgag |
117 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
37347032 |
agaaatgggtctgcaagatgcaatcaacacaagaataggagggtggggtgttaaaggaataagtgggggtcaaaaaaggagagttagcatttccattgag |
37346933 |
T |
|
| Q |
118 |
attcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaatagcttccttggaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346932 |
attcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaatagcttccttggaca |
37346833 |
T |
|
| Q |
218 |
aaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaacttttccataatctttgtcttttgtcttctggtaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37346832 |
aaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaacttttccataatctttgtcttttgtcttctggtaa |
37346733 |
T |
|
| Q |
318 |
aacagtttactttggacctgcttctgctgcatctgaggttaggattaannnnnnnnnaatgttaatatgcaattatatataattgatgacca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
37346732 |
aacagtttactttggacctgcttctgctgcatctgaggttaggattaatttttttttaatgttaatattcaattatatataattgatgacca |
37346641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 37330572 - 37330912
Alignment:
| Q |
17 |
aagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttccattga |
116 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37330572 |
aagaaatgggtctgcaagatgcaatgaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattga |
37330671 |
T |
|
| Q |
117 |
gattcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaatagcttccttggac |
216 |
Q |
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||| || |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37330672 |
gatcctaacacgtcctagacttctttttcttgatgagccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaattgcttccttggac |
37330771 |
T |
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| Q |
217 |
aaaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaacttttccataatctttgtcttttgtcttctggta |
316 |
Q |
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||||||||||||||||||||||| ||| || | || ||||||||||| |||||||||||||||||||| || ||||| ||||||||| ||||||| |||| |
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| T |
37330772 |
aaaaaggatggaattcaaaggacaattattacatccatccatcaacctagtactgaagtttttcaactctttcataacctttgtcttctgtcttcaggta |
37330871 |
T |
|
| Q |
317 |
aaacagtttactttggacctgcttctgctgcatctgaggtt |
357 |
Q |
| |
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||||||||||||||||||||||| |||||||| ||||||| |
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| T |
37330872 |
gaacagtttactttggacctgcttatgctgcatgtgaggtt |
37330912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 37321650 - 37321994
Alignment:
| Q |
17 |
aagaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttccattga |
116 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37321650 |
aagaaatgggtctgcaagatgcaatgaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttgcattga |
37321749 |
T |
|
| Q |
117 |
gattcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaatagcttccttggac |
216 |
Q |
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||| || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |
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| T |
37321750 |
gatcctaacacgtcctagacttctatttcttgatgagccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaattgctactttggat |
37321849 |
T |
|
| Q |
217 |
aaaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaacttttccataatctttgtcttttgtcttctggta |
316 |
Q |
| |
|
| || |||||||||| ||||| ||| || | || ||||||||||| ||||||||||||||||||||||| ||||| || |||||| ||||||| |||| |
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| T |
37321850 |
cataaagatggaattcggaggactattattacatccatccatcaacctagtactgaagtttttcaactttttcataacctatgtcttctgtcttcaggta |
37321949 |
T |
|
| Q |
317 |
aaacagtttactttggacctgcttctgctgcatctgaggttagga |
361 |
Q |
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||||||||||||||||||||||||| |||| | ||||||||||| |
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| T |
37321950 |
gaacagtttactttggacctgcttctactgcttgtgaggttagga |
37321994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 361
Target Start/End: Complemental strand, 19544867 - 19544524
Alignment:
| Q |
18 |
agaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttccattgag |
117 |
Q |
| |
|
||||||||||||||||||||| | ||||||| ||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||||| |
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| T |
19544867 |
agaaatgggtctgcaagatgctactaacacaataattggaggatggggtgttaaaggcataagtggaggtcagaaaaggagagttagcatttgcattgag |
19544768 |
T |
|
| Q |
118 |
attcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaatagcttccttggaca |
217 |
Q |
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|| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||| |
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| T |
19544767 |
atccttacacgtccaaaacttctttttcttgatgaaccaacaagtggacttgatagtgctgcttcttactatgttatgacaagaattgctaccttggatc |
19544668 |
T |
|
| Q |
218 |
aaaaggatggaattcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaacttttccataatctttgtcttttgtcttctggtaa |
317 |
Q |
| |
|
| || ||||| ||||| ||||| ||| || | || ||||||||||| |||| ||||||||||||||||| || || ||||||||| | ||||| |||| |
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| T |
19544667 |
ataaagatggtattcagaggactattattacttccatccatcaacctggtaccgaagtttttcaactttttcacaacctttgtcttctctcttcaggtag |
19544568 |
T |
|
| Q |
318 |
aacagtttactttggacctgcttctgctgcatctgaggttagga |
361 |
Q |
| |
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| || |||||||||||||||||||||||| |||||||||||| |
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| T |
19544567 |
acttgtatactttggacctgcttctgctgcaactgaggttagga |
19544524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 195 - 365
Target Start/End: Original strand, 37343185 - 37343357
Alignment:
| Q |
195 |
gaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattgttgcctcaatccatcaa--ccaagtactgaagtttttcaacttttccata |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| ||||| |||||||||||| |||| |
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| T |
37343185 |
gaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccattattgcctcaatccatcaaaacctagtaatgaagcttttcaactttttcata |
37343284 |
T |
|
| Q |
293 |
atctttgtcttttgtcttctggtaaaacagtttactttggacctgcttctgctgcatctgaggttaggattaa |
365 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
37343285 |
atctttgtctcttgtcttctggtaaaacagtttacattggacctgcttctgctgcatctgaggttagaattaa |
37343357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 37298256 - 37298434
Alignment:
| Q |
18 |
agaaatgggtctgcaagatgcaatcaacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttccattgag |
117 |
Q |
| |
|
||||||||| ||||| ||||| || |||||||| ||||||||| ||| |||||| |||| ||||| |||| ||||||| | ||||||| ||||||| |
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| T |
37298256 |
agaaatgggcctgcaggatgctattaacacaagggttggagggtatggttccaaaggcctaagcggggggcaaagaaggagactaagcatttgcattgag |
37298355 |
T |
|
| Q |
118 |
attcttacacgtccaagacttctatttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatga |
196 |
Q |
| |
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||||| || | || |||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
37298356 |
attctaactcaccctagacttcttttccttgatgaaccaactagtggacttgatagtgcagcttcctactatgttatga |
37298434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 43 - 315
Target Start/End: Original strand, 37291163 - 37291435
Alignment:
| Q |
43 |
aacacaagaattggagggtggggtgtgaaaggcataagtgggggtcaaaaaaggagagttagcatttccattgagattcttacacgtccaagacttctat |
142 |
Q |
| |
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|||||||| ||||||| |||||| ||||| ||||||| || |||| || ||| ||||||||| ||| |||||||| || || || |||||||| | |
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| T |
37291163 |
aacacaagggttggaggatggggttctaaaggtctaagtggaggacaaaggagaagacttagcatttgcatcgagattctaacgcgcccgagacttctct |
37291262 |
T |
|
| Q |
143 |
ttcttgatgaaccaactagtggacttgatagtgctgcttcttactatgttatgaaaagaatagcttccttggacaaaaaggatggaattcaaaggaccat |
242 |
Q |
| |
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| ||||||||||| ||||| |||||||||||||| ||||| ||||||||||||| |||| || ||| | || ||| |||||||||||||| || |
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| T |
37291263 |
tccttgatgaaccgactagcggacttgatagtgcagcttcctactatgttatgagtggaattgcacgtttgaatttaagggacggaattcaaaggactat |
37291362 |
T |
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| Q |
243 |
tgttgcctcaatccatcaaccaagtactgaagtttttcaacttttccataatctttgtcttttgtcttctggt |
315 |
Q |
| |
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||||| || ||||||||||| || | |||| ||||| ||||||| ||| | ||||||||| ||||||||||| |
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| T |
37291363 |
tgttgtatccatccatcaacctagcagtgaactttttgaactttttcatgacctttgtcttctgtcttctggt |
37291435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Original strand, 37298467 - 37298525
Alignment:
| Q |
229 |
attcaaaggaccattgttgcctcaatccatcaaccaagtactgaagtttttcaactttt |
287 |
Q |
| |
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||||||||||| |||||||| || || ||||| || |||| |||||||||||||||||| |
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| T |
37298467 |
attcaaaggacaattgttgcatccatacatcagcctagtagtgaagtttttcaactttt |
37298525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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