View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19890_low_1 (Length: 306)
Name: NF19890_low_1
Description: NF19890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19890_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 45453185 - 45452904
Alignment:
| Q |
9 |
agcagagatccaactgggctagcaattgtaagaaaattgtacaaagtcccaaagttctttaacccaaatacttctgaagttgctgctaatgcaattgacc |
108 |
Q |
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| T |
45453185 |
agcagagatccaactgggctagcaattgtaagaaaattgtacaaagtcccaaagttctttaacccaaatacttctgaagttgctgctaatgcaattgacc |
45453086 |
T |
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| Q |
109 |
aatgggatccatatccaaaacccatagttattgctatcacataaacttgtccaaccaaacctatagtatagtaggagagtcccaaagacattactgcttg |
208 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45453085 |
aatgggatccatatccaaaacccatagttatcgctatcacataaacttgtccaaccaaacctatggtatagtaggagagtcccaaagacattactgcttg |
45452986 |
T |
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| Q |
209 |
aatcattgccaatgccacaagtctcggatatccaaattttctgttnnnnnnnccaggcggaagttggagtggaacattttat |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45452985 |
aatcattgccaatgccacaagtctcggatatccaaattttctgttaaaaaaaccaggcggaagttggagtggaacattttat |
45452904 |
T |
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