View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19890_low_2 (Length: 237)
Name: NF19890_low_2
Description: NF19890
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19890_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 31836060 - 31836193
Alignment:
| Q |
1 |
tcaataccaaattctcaagttgatttacattcattttttgttatcatatataccaataaacatatcatcatttttccttattaaggatcatatatgttag |
100 |
Q |
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| T |
31836060 |
tcaataccaaattctcaagttgatttatattcattttttgttatcatatataccaataaacacatcatcatttttccttattatggatcatatatgttag |
31836159 |
T |
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| Q |
101 |
accaatgaattttactctaattgaaatatgaaca |
134 |
Q |
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| T |
31836160 |
accaatgaattttactctaattgatatatgaaca |
31836193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 31840197 - 31840338
Alignment:
| Q |
1 |
tcaataccaaattctcaagttgatttacattcattttttgtt--------atcatatataccaataaacatatcatcatttttccttattaaggatcata |
92 |
Q |
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|||||||||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
31840197 |
tcaataccaaatcctcaaattgatttacattcatttttttttttttttttatcatatataccaataaacatatcttcatttttccttattatggatcata |
31840296 |
T |
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| Q |
93 |
tatgttagaccaatgaattttactctaattgaaatatgaaca |
134 |
Q |
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| T |
31840297 |
tatgttagaccaatgaattttactcaaattgatatatgaaca |
31840338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 15931521 - 15931635
Alignment:
| Q |
1 |
tcaataccaaattctcaagttgatttacattcattttttgttatcatatataccaataaacatatcatcatttttccttattaaggatcatatatgttag |
100 |
Q |
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|||||||||||| |||||||||||| || |||||||||| ||||||| || ||||| ||||||| | ||||||||| |||| ||||||| ||||||| |
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| T |
15931521 |
tcaataccaaatcctcaagttgattgacgttcatttttt---atcatatttatcaatacacatatcttaatttttcctcattatggatcatttatgttac |
15931617 |
T |
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| Q |
101 |
accaatgaattttactct |
118 |
Q |
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| T |
15931618 |
aacaatgaattttactct |
15931635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 19960826 - 19960954
Alignment:
| Q |
1 |
tcaataccaaattctcaagttgatttacattcattttttgttatcatatataccaataaacatatcatcatttttccttattaaggatcatatatgttag |
100 |
Q |
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|
|||||||||||| ||||||||||||||| |||||||||| | ||| |||| | |||| ||||| | |||||||||||||| ||||||| |||||||| |
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| T |
19960826 |
tcaataccaaatcctcaagttgatttacgttcatttttt--tgtcaaatattc-aatatgcatatattaatttttccttattatggatcatttatgttag |
19960922 |
T |
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| Q |
101 |
accaatgaattttactctaattgaaatatgaa |
132 |
Q |
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| |||| ||||||||||| ||||| ||||||| |
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| T |
19960923 |
aacaataaattttactcttattgatatatgaa |
19960954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 220
Target Start/End: Original strand, 31836250 - 31836279
Alignment:
| Q |
191 |
cgtctctcaacacatatcttcattttgtat |
220 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
31836250 |
cgtctctcaacacatatcttcattttgtat |
31836279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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