View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_high_10 (Length: 318)
Name: NF19891_high_10
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_high_10 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 3700045 - 3700362
Alignment:
| Q |
1 |
gtgggatccaactaaatttccgccaattaaagagtgtgtttgaaaagagtgttttattagcactcctccaactcaaa-tctcaaacttggttttaaaagt |
99 |
Q |
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||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| |
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| T |
3700045 |
gtgggatccaactgaatttctcgcaattaaagagtgtgtttgaaaagagtgttttatcagcactcctccaactcaaaatctcaaacttgattttaaaagt |
3700144 |
T |
|
| Q |
100 |
aagatatttctttatataaatagccataactgatcaattactattcaatggctaaaacaactcatatagcagtaatttcagtccctctattcagccacca |
199 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700145 |
aa-atatttctttatataaatagccataactgatcaattactattcaatggctaaaacaactcatatagcagtaatttcagtccctctattcagccacca |
3700243 |
T |
|
| Q |
200 |
atcctccataattgagttatgcaagagactcattcatctccataaatacattcatatcacttgcatcttccccactattgatgcacctatccctaccacc |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
3700244 |
atcctccataattgagttatgcaagagactcattcatctccataaatacattcatatcacttgcatcttccccactattgatgcacctatccctgccacc |
3700343 |
T |
|
| Q |
300 |
ctcaaattacttgaatctc |
318 |
Q |
| |
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||||||||||||||||||| |
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| T |
3700344 |
ctcaaattacttgaatctc |
3700362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 142 - 318
Target Start/End: Original strand, 3706867 - 3707043
Alignment:
| Q |
142 |
attcaatggctaaaacaactcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctcca |
241 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| |||||||||| ||||| ||| || || |||||||| ||||||||||| ||||||||||| |
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| T |
3706867 |
attccatggctaaaacaactcatatagcagtagtttcaatccctctatttagccatcaaagttctattattgagttttgcaagagactaattcatctcca |
3706966 |
T |
|
| Q |
242 |
taaatacattcatatcacttgcatcttccccactattgatgcacctatccctaccaccctcaaattacttgaatctc |
318 |
Q |
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| | |||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
3706967 |
tcaccacattcatgtcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctc |
3707043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 142 - 318
Target Start/End: Complemental strand, 3771328 - 3771152
Alignment:
| Q |
142 |
attcaatggctaaaacaactcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctcca |
241 |
Q |
| |
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|||| ||||||||| |||||||||||||||| ||||| | |||||||| ||||||||| || || |||||||| ||||||||||| ||||||||||| |
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| T |
3771328 |
attctatggctaaaggaactcatatagcagtagtttcaattcctctatttagccaccaaagttctattattgagttctgcaagagactaattcatctcca |
3771229 |
T |
|
| Q |
242 |
taaatacattcatatcacttgcatcttccccactattgatgcacctatccctaccaccctcaaattacttgaatctc |
318 |
Q |
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| | ||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
3771228 |
tcaccacattcatatcacttgcatcttctccactattgatgcaccaatccctgccaccctcaaattacttgaatctc |
3771152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 147 - 318
Target Start/End: Complemental strand, 3778984 - 3778813
Alignment:
| Q |
147 |
atggctaaaacaactcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctccataaat |
246 |
Q |
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|||||||||||||||||||||| ||||| |||| | ||| | || ||||||||| || || |||||||| ||||||||||| |||||||||||| | |
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| T |
3778984 |
atggctaaaacaactcatatagtagtaacttcaattcctgtgtttagccaccaaagttctattattgagttttgcaagagactaattcatctccatcacc |
3778885 |
T |
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| Q |
247 |
acattcatatcacttgcatcttccccactattgatgcacctatccctaccaccctcaaattacttgaatctc |
318 |
Q |
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|||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
3778884 |
acattcatgtcacttgcatcttccccaccattgatgcacctatccctgccaccctcaaattacttgagtctc |
3778813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 147 - 318
Target Start/End: Original strand, 3718381 - 3718552
Alignment:
| Q |
147 |
atggctaaaacaactcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctccataaat |
246 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| | |||||||| ||||||||| || || |||||||| ||||||||| | |||||||||||| | |
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| T |
3718381 |
atggctaaaggaactcatatagcagtagtttcaattcctctatttagccaccaaagttctattattgagttttgcaagagattaattcatctccatcacc |
3718480 |
T |
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| Q |
247 |
acattcatatcacttgcatcttccccactattgatgcacctatccctaccaccctcaaattacttgaatctc |
318 |
Q |
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|||||||| ||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| |||| |
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| T |
3718481 |
acattcatgtcacttgcatcttccccaccattgatgcaccaatccctgccaccctcaaattacttgagtctc |
3718552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 161 - 318
Target Start/End: Complemental strand, 33006197 - 33006040
Alignment:
| Q |
161 |
tcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcattcatctccataaatacattcatatcact |
260 |
Q |
| |
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|||||||| ||||| ||| ||||||| || ||||| |||| || |||||||||| ||||||||||||||||| ||||||| || | || |||||| |
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| T |
33006197 |
tcatatagtagtaacatcaatccctctgtttagccatgaatcttctgtaattgagttctgcaagagactcattcaagtccataaccacttccaaatcact |
33006098 |
T |
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| Q |
261 |
tgcatcttccccactattgatgcacctatccctaccaccctcaaattacttgaatctc |
318 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33006097 |
tgcatcttccccaccattgatgcacctatcccagccaccctcaaattacttgaatctc |
33006040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 12769 - 12665
Alignment:
| Q |
133 |
tcaattactattcaatggctaaaacaactcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcat |
232 |
Q |
| |
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|||||| | |||| ||||| ||||||| ||||||||||| ||||||| |||| ||||||||||||| | ||||| || || || ||||||| |||||| |
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| T |
12769 |
tcaattccaattccatggccaaaacaattcatatagcagcaatttcaatcccagcattcagccaccaagcttccatcatagaattttgcaagaaactcat |
12670 |
T |
|
| Q |
233 |
tcatc |
237 |
Q |
| |
|
||||| |
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| T |
12669 |
tcatc |
12665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 133 - 237
Target Start/End: Original strand, 60075 - 60179
Alignment:
| Q |
133 |
tcaattactattcaatggctaaaacaactcatatagcagtaatttcagtccctctattcagccaccaatcctccataattgagttatgcaagagactcat |
232 |
Q |
| |
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|||||| | |||| ||||| ||||||| ||||||||||| ||||||| |||| ||||||||||||| | ||||| || || || ||||||| |||||| |
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| T |
60075 |
tcaattccaattccatggccaaaacaattcatatagcagcaatttcaatcccagcattcagccaccaagcttccatcatagaattttgcaagaaactcat |
60174 |
T |
|
| Q |
233 |
tcatc |
237 |
Q |
| |
|
||||| |
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|
| T |
60175 |
tcatc |
60179 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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