View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_high_18 (Length: 251)
Name: NF19891_high_18
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3778799 - 3778562
Alignment:
| Q |
1 |
aaactgcactttcctccctccaataaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
3778799 |
aaactgcactttcctccctccaataaacaaacaagacttgccacacgatgttgtcttggaaattgaactcgcggtggttcaatccatgccatctcttcgt |
3778700 |
T |
|
| Q |
101 |
agctcgttgaggttactgtgttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3778699 |
agctcgttgaggttactgtgttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagact |
3778600 |
T |
|
| Q |
201 |
taaacctcttatctttcgtatacttcccactttctgcc |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
3778599 |
taaacctcttatctttcgtatacttcccactttctgcc |
3778562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 4 - 238
Target Start/End: Original strand, 3707060 - 3707294
Alignment:
| Q |
4 |
ctgcactttcctccctccaataaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgtagc |
103 |
Q |
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||||| ||||||||||||||||||||||| |||||| |||||| |||||| | |||||||||||||||| |||||||||||||||||||||||||| | | |
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| T |
3707060 |
ctgcagtttcctccctccaataaacaaactagacttcccacacgatgttggcatggaaattgaactcgcggtggttcaatccatgccatctcttcgcaac |
3707159 |
T |
|
| Q |
104 |
tcgttgaggttactgtgttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaa |
203 |
Q |
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| T |
3707160 |
tcgttgaggttactgtgttcaacttcaacatgcacaccagtgtcagcattggttgttgatccttttgcaagtcaagcattagaaatagctaaagacttga |
3707259 |
T |
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| Q |
204 |
acctcttatctttcgtatacttcccactttctgcc |
238 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||| |
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| T |
3707260 |
acctcttatcttttgtatatttcccactttctgcc |
3707294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 3718570 - 3718803
Alignment:
| Q |
5 |
tgcactttcctccctccaataaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgtagct |
104 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| || || | ||||| || | || | |||||||||||||| |||||| | || |
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| T |
3718570 |
tgcactttcctccctccaataaacaaacaagacttaccacaggattttattggggaaaacgatttggcgaccgctcaatccatgccatgtcttcggaact |
3718669 |
T |
|
| Q |
105 |
cgttgaggttactgtgttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagacttaaa |
204 |
Q |
| |
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|||||||||||| ||||||| ||||||||||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| || |
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| T |
3718670 |
tgttgaggttactttgttcaatttcaacatgcacaccagtgtcagcattggttgttgatccttttgcaagtcaagcattagaaatagctaaagacttgaa |
3718769 |
T |
|
| Q |
205 |
cctcttatctttcgtatacttcccactttctgcc |
238 |
Q |
| |
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|||||||||||| |||||||||||||||||||| |
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| T |
3718770 |
cctcttatcttttatatacttcccactttctgcc |
3718803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3771138 - 3770901
Alignment:
| Q |
1 |
aaactgcactttcctccctccaataaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |||| | || ||||||||||||| ||| | | || |||||||||||||||| |||| |
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| T |
3771138 |
aaactgcactttcctccctccaattaacaaacaagacttaccacgcgattttgtcttggaaatcgaattgacgacggctcaatccatgccatcttttcgc |
3771039 |
T |
|
| Q |
101 |
agctcgttgaggttactgtgttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagact |
200 |
Q |
| |
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| || ||| || ||||||||| |||||||| | |||| || ||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
3771038 |
aagtcattgttgtccttgtgttcaagttcaacatcctcaccagtggtagcattggttgttgatccttatgcaagtcaagcattagaaatagcaaaagact |
3770939 |
T |
|
| Q |
201 |
taaacctcttatctttcgtatacttcccactttctgcc |
238 |
Q |
| |
|
||| |||||||||| |||||||| |||||||||||| |
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| T |
3770938 |
agaacatcttatcttttgtatactttccactttctgcc |
3770901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 238
Target Start/End: Complemental strand, 33006024 - 33005792
Alignment:
| Q |
3 |
actgcactttcctccctccaataaacaaacaagacttgccacaccatgttgtcttggaaattgaactcgccgtggttcaatccatgccatctcttcgtag |
102 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| | ||||| | ||| | || || ||||||| | || | |||||||||||||| |||| |
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| T |
33006024 |
actgcactttcctccctccaataaaaaaacaagacctaccacaagaagttaccatgcaacttgaacttggtgttactaaatccatgccatcttttcgcga |
33005925 |
T |
|
| Q |
103 |
ctcgttgaggttactgtgttcaacttcaacatgcacaccggtatcagctttggttgttgatccttttgcaagtcatgcattagaaatagcaaaagactta |
202 |
Q |
| |
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|||||||| || || |||||||||||||| ||||||||| ||| | ||||||||||||||||||| || |||||||||||||| ||||| || |
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| T |
33005924 |
atcgttgagtttgctttgttcaacttcaac---cacaccggttgtagcaatagttgttgatccttttgcaaaccaagcattagaaatagcgaaagagttc |
33005828 |
T |
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| Q |
203 |
aacctcttatctttcgtatacttcccactttctgcc |
238 |
Q |
| |
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||| ||||||||||| | |||||||| |||||||| |
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| T |
33005827 |
aacatcttatctttcatgtacttccctgtttctgcc |
33005792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 3700557 - 3700616
Alignment:
| Q |
179 |
gcattagaaatagcaaaagacttaaacctcttatctttcgtatacttcccactttctgcc |
238 |
Q |
| |
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|||||||||||||||||||| || ||||||||||||||| ||||||| |||||||||||| |
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| T |
3700557 |
gcattagaaatagcaaaagagttcaacctcttatctttcatatactttccactttctgcc |
3700616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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