View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_high_2 (Length: 597)
Name: NF19891_high_2
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 149 - 579
Target Start/End: Complemental strand, 13887235 - 13886794
Alignment:
| Q |
149 |
taaaaactgcattgaaagaaggagtttgaagacacattgaacacttgcatatgccagatattgttgaaatgaatacaaagtgtctagtgatatgtggagc |
248 |
Q |
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| T |
13887235 |
taaaaactgcattgaaagaaggagtttgaagacacgttgaacacttgcatatgccagatattgttgaaatgaatacaaagtgtctagtgatatgtggagc |
13887136 |
T |
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| Q |
249 |
aaaactagcaacaaccaaactagagtgattatacatacccaaattcgaggagactcactttcttaccaactaccttatgatgtttagttacttcaccata |
348 |
Q |
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| T |
13887135 |
aaaattagaaacaaccaacctagagtgattatacatacccaaattcgaggagactcactttcttaccaactaccttatgatgtttagttacttcaccata |
13887036 |
T |
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| Q |
349 |
acctcttcaactttttgagtgatcattttctcactcttgaagattcacttgcctc-----------taatttacgtaatcctattagttattccatactt |
437 |
Q |
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| T |
13887035 |
acctcttcaacttttggagtgatcattttctcactcttgaagattcacttgcctcaattacccttggattttacgtaatcctattagttattccatactt |
13886936 |
T |
|
| Q |
438 |
tcttcaaccccttaaatgcgtatatctgcctttcgaacaatttattgctctcaactaaaggataacacacaatgactccatagttgcaccattatgatgc |
537 |
Q |
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| T |
13886935 |
tcttcaaccccttaaatgcgtatatctgcctttcgaacaatttattgctctcaactagaggataacacacaacgactacatagttgcatcattctgatgc |
13886836 |
T |
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| Q |
538 |
caccatttgtttccttttaatcccagttgtggaagactccac |
579 |
Q |
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| T |
13886835 |
caccatttgtttccttttaatcccaattgtggaagactccac |
13886794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 62
Target Start/End: Complemental strand, 13887426 - 13887395
Alignment:
| Q |
31 |
aacatctaatgaatgtaattctatccactgag |
62 |
Q |
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| T |
13887426 |
aacatctaatgaatgtaattctatccactgag |
13887395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 547
Target Start/End: Complemental strand, 16136347 - 16136282
Alignment:
| Q |
481 |
attgctctcaactaaaggataacacacaatgactccatagttgcaccattatgatgccaccatttgt |
547 |
Q |
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| T |
16136347 |
attgctttcaactaaagcataacacacaaggactacatagttgta-cattcttatgccaccatttgt |
16136282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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