View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19891_high_3 (Length: 521)

Name: NF19891_high_3
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19891_high_3
NF19891_high_3
[»] chr1 (11 HSPs)
chr1 (13-465)||(7652017-7652467)
chr1 (316-375)||(13054879-13054936)
chr1 (319-375)||(21400024-21400078)
chr1 (319-371)||(33153881-33153931)
chr1 (319-375)||(43611430-43611484)
chr1 (312-349)||(45652113-45652150)
chr1 (319-375)||(3481566-3481621)
chr1 (312-375)||(10132438-10132499)
chr1 (146-245)||(26346802-26346902)
chr1 (127-195)||(42586487-42586555)
chr1 (312-375)||(47528441-47528502)
[»] chr7 (17 HSPs)
chr7 (315-375)||(16577857-16577915)
chr7 (315-375)||(16587747-16587805)
chr7 (81-167)||(37923252-37923338)
chr7 (309-375)||(38553824-38553888)
chr7 (316-350)||(35165562-35165596)
chr7 (146-258)||(2401263-2401376)
chr7 (312-349)||(6768701-6768738)
chr7 (319-375)||(7872749-7872803)
chr7 (319-371)||(7994885-7994935)
chr7 (130-195)||(28080632-28080697)
chr7 (319-372)||(31533394-31533447)
chr7 (319-371)||(40187637-40187687)
chr7 (312-375)||(23069851-23069912)
chr7 (316-375)||(24225979-24226036)
chr7 (320-375)||(26471222-26471275)
chr7 (320-375)||(26547662-26547715)
chr7 (312-375)||(46987092-46987153)
[»] chr4 (19 HSPs)
chr4 (319-375)||(10564466-10564520)
chr4 (309-349)||(34968000-34968040)
chr4 (309-375)||(21623410-21623474)
chr4 (324-374)||(23160047-23160095)
chr4 (312-375)||(32139345-32139407)
chr4 (321-375)||(43539821-43539873)
chr4 (315-349)||(9783929-9783963)
chr4 (312-349)||(9990296-9990333)
chr4 (187-251)||(18528326-18528391)
chr4 (309-350)||(19124614-19124654)
chr4 (316-349)||(37735819-37735852)
chr4 (127-191)||(41037071-41037136)
chr4 (146-179)||(44249096-44249129)
chr4 (187-262)||(5846278-5846354)
chr4 (320-352)||(10043814-10043846)
chr4 (316-375)||(10082408-10082465)
chr4 (312-375)||(19486703-19486767)
chr4 (312-375)||(19854571-19854632)
chr4 (319-370)||(44221458-44221507)
[»] chr3 (12 HSPs)
chr3 (316-375)||(27185483-27185540)
chr3 (127-258)||(33640183-33640317)
chr3 (315-375)||(35863810-35863868)
chr3 (321-375)||(5117214-5117266)
chr3 (317-374)||(55494696-55494751)
chr3 (319-371)||(2186428-2186478)
chr3 (312-349)||(15507265-15507302)
chr3 (319-375)||(35191818-35191872)
chr3 (212-256)||(11659582-11659626)
chr3 (316-375)||(21245799-21245856)
chr3 (312-375)||(30200832-30200893)
chr3 (312-375)||(54230093-54230154)
[»] chr6 (10 HSPs)
chr6 (206-257)||(15082037-15082088)
chr6 (127-196)||(6542757-6542826)
chr6 (312-349)||(28592681-28592718)
chr6 (312-375)||(30639420-30639481)
chr6 (319-375)||(34828312-34828367)
chr6 (312-349)||(9333974-9334011)
chr6 (315-371)||(16390439-16390493)
chr6 (315-375)||(17151242-17151300)
chr6 (321-349)||(10778870-10778898)
chr6 (145-201)||(30505698-30505754)
[»] chr8 (10 HSPs)
chr8 (316-352)||(13032360-13032396)
chr8 (313-375)||(42208464-42208524)
chr8 (315-375)||(13575295-13575353)
chr8 (312-349)||(27044884-27044921)
chr8 (319-375)||(30623299-30623353)
chr8 (319-375)||(39821890-39821944)
chr8 (312-375)||(1244699-1244760)
chr8 (312-348)||(3102339-3102375)
chr8 (319-371)||(7404787-7404838)
chr8 (317-349)||(8078099-8078131)
[»] chr5 (12 HSPs)
chr5 (320-375)||(2705518-2705571)
chr5 (312-375)||(11017182-11017243)
chr5 (312-374)||(5195145-5195206)
chr5 (319-375)||(6489013-6489067)
chr5 (319-375)||(26409259-26409313)
chr5 (312-349)||(31708140-31708177)
chr5 (311-348)||(38031443-38031480)
chr5 (319-375)||(39143720-39143774)
chr5 (320-371)||(1512865-1512914)
chr5 (314-350)||(3222760-3222796)
chr5 (316-375)||(18391606-18391663)
chr5 (312-375)||(21657392-21657453)
[»] chr2 (10 HSPs)
chr2 (312-375)||(24393251-24393312)
chr2 (321-375)||(43826445-43826497)
chr2 (319-371)||(7640668-7640718)
chr2 (319-375)||(24592847-24592901)
chr2 (319-375)||(25274830-25274884)
chr2 (312-349)||(34903547-34903584)
chr2 (146-258)||(36316119-36316232)
chr2 (319-375)||(43117191-43117245)
chr2 (332-375)||(15381639-15381680)
chr2 (324-375)||(34191314-34191363)
[»] scaffold0118 (1 HSPs)
scaffold0118 (309-375)||(40004-40068)
[»] scaffold0045 (1 HSPs)
scaffold0045 (277-311)||(41189-41223)
[»] scaffold0008 (1 HSPs)
scaffold0008 (321-349)||(119201-119229)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 465
Target Start/End: Complemental strand, 7652467 - 7652017
Alignment:
Q  13 agatgaagatgaggttaaaaaacatcgtgagatcatgtgtaaatacaactcaattggtaatttttgagagaaatcgtggttggatctaatacaatttcac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||| |||    
T  7652467 agatgaagatgaggttaaaaaacatcgtgagatcatgtgtaaatacaactcaattggtaatttttgagagaaagtgtggttggatctaatacaattccac 7652368  T
Q  113 aaaaattagtttaggaggtgaagattgccctatttataaacacattgtcagaccaccttttatccgacgtaaggctcttaacacccccctgaagctcatg 212  Q
    ||||| ||| ||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||| |||    
T  7652367 aaaaactagcttatgaggtgaagattgccctacttataaacacattgtcagaccatcttttatccgatgtaagactcttaacaccctcctgaagctaatg 7652268  T
Q  213 actggacatctggagcatgaacataaatggtggatggcccgataacaaaagctcgataaatggtagaggctttgataccatcttagaaatcgtagttgat 312  Q
    | ||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  7652267 attggacatcttgagcgtgaacataaacggtggatggcccgataacaaaagctcgataaatggtggaggctttgataccatcttagaaatcgtagttggt 7652168  T
Q  313 gtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaactaagcttaaaatttgaattacattaatatgcagaga 412  Q
    ||| ||||||||||| |||||||||||||||||||  |||||||||| |||||||||| ||||||||||| ||||||| || ||||||||||||||||||    
T  7652167 gtctgaggttcgaacttcagaccttacatatatta--tgtattgtccataccaactgaactaactaagctaaaaattttaagtacattaatatgcagaga 7652070  T
Q  413 ttagagtttaaatttcaaattctccacttctccgtattaaactaccgaaccat 465  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7652069 ttagagtttaaatttcaaattctccacttctccgtattaaactaccggaccat 7652017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 13054936 - 13054879
Alignment:
Q  316 cgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||||||||||| |||||| |||||||||  || |||||||||||||||| ||||||    
T  13054936 cgaggttcgaacctccgaccttgcatatatta--tgcattgtccctaccaactaagctaa 13054879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 21400024 - 21400078
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||||||  ||||||| |||||||||||   |||||||||||||||||||||||    
T  21400024 ggttcgaacccaagaccttgcatatattatgc--attgtccctaccaactgagctaa 21400078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 33153881 - 33153931
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgag 371  Q
    |||| ||||||| ||||||||||||||||  || |||||||||||||||||||    
T  33153881 ggtttgaacctcggaccttacatatatta--tgcattgtccctaccaactgag 33153931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 43611484 - 43611430
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||| ||||| || ||||||||||||||||||  ||||||| |||||||||||||||    
T  43611484 ggtttgaaccccataccttacatatattatgt--attgtccataccaactgagctaa 43611430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 45652113 - 45652150
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  45652113 tgtctgaggttcgaacctcggaccttacatatattatg 45652150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 3481621 - 3481566
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||| ||||| |||||||| |||||||||||  | ||||||||||||||||||||||    
T  3481621 ggtttgaaccccagaccttgcatatattatgcat-ttgtccctaccaactgagctaa 3481566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 10132438 - 10132499
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||| ||||||||||| |||||||| |||||||||  || ||||||| |||||||||| ||||    
T  10132438 tgtccaaggttcgaaccccagaccttgcatatatta--tgcattgtccttaccaactgatctaa 10132499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 146 - 245
Target Start/End: Original strand, 26346802 - 26346902
Alignment:
Q  146 ttataaacacattgtcagaccaccttttatccgacgtaaggctctt-aacacccccctgaagctcatgactggacatctggagcatgaacataaatggtg 244  Q
    ||||||| ||||||||||||||  |||||||| | ||||  ||||| ||||| ||||| | |  || ||||| |||||||||||||| || |||||||||    
T  26346802 ttataaatacattgtcagaccattttttatccaatgtaaaactctttaacacacccctcacgtccaagactgaacatctggagcatggacctaaatggtg 26346901  T
Q  245 g 245  Q
    |    
T  26346902 g 26346902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 42586487 - 42586555
Alignment:
Q  127 gaggtgaagattgccctatttataaacacattgtcagaccaccttttatccgacgtaaggctcttaaca 195  Q
    ||||||| |||||||| | ||||| |||||||||||| ||| || |||||||| || || |||||||||    
T  42586487 gaggtgaggattgccccacttatatacacattgtcaggccatctcttatccgatgtgagactcttaaca 42586555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 47528441 - 47528502
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| |||||||||||| |||||| | |||||||  || ||||||| |||||||||||||||    
T  47528441 tgtccggggttcgaacctcggaccttgcgtatatta--tgcattgtccttaccaactgagctaa 47528502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 16577857 - 16577915
Alignment:
Q  315 ccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||| ||||| |||||||| ||||||||||||  |||||||||||||||||||||||    
T  16577857 ccgaggtttgaaccccagaccttgcatatattatgt--attgtccctaccaactgagctaa 16577915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 16587805 - 16587747
Alignment:
Q  315 ccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||| ||||| |||||||| ||||||||||||  |||||||||||||||||||||||    
T  16587805 ccgaggtttgaaccccagaccttgcatatattatgt--attgtccctaccaactgagctaa 16587747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 81 - 167
Target Start/End: Original strand, 37923252 - 37923338
Alignment:
Q  81 agaaatcgtggttggatctaatacaatttcacaaaaattagtttaggaggtgaagattg-ccctatttataaacacattgtcagacca 167  Q
    ||||||||||||| ||||||| ||| ||||||||||   |||||  ||| ||| ||||| ||||||||||||||||||||||||||||    
T  37923252 agaaatcgtggttagatctaacacagtttcacaaaacc-agtttgtgagatgatgattgtccctatttataaacacattgtcagacca 37923338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 38553888 - 38553824
Alignment:
Q  309 tgatgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||||||||||||| || |||||||||||||||  || ||||| | |||||||||||||||    
T  38553888 tgatgtccgaggttcgaaccccaaaccttacatatatta--tgcattgttcttaccaactgagctaa 38553824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 35165596 - 35165562
Alignment:
Q  316 cgaggttcgaacctcagaccttacatatattatgt 350  Q
    |||||||||||||||||||||||||||||||||||    
T  35165596 cgaggttcgaacctcagaccttacatatattatgt 35165562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 2401376 - 2401263
Alignment:
Q  146 ttataaacacattgtcagaccaccttttatccgacgtaaggctc-ttaacacccccctgaagctcatgactggacatctggagcatgaacataaatggtg 244  Q
    ||||||||||||||||||||| ||| |||||||| || |  ||| ||||||| ||||| |  | || ||||||| ||||||| | || |||||||||||     
T  2401376 ttataaacacattgtcagaccgcctcttatccgatgtgaaactctttaacacacccctcatacccaggactggatatctggaacgtggacataaatggtc 2401277  T
Q  245 gatggcccgataac 258  Q
    | ||| ||||||||    
T  2401276 ggtggtccgataac 2401263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 6768701 - 6768738
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  6768701 tgtccgagattcgaacctcagaccttgcatatattatg 6768738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 7872749 - 7872803
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||| |||||||| |||||||||  || ||||||| |||||||||||||||    
T  7872749 ggttcgaaccccagaccttgcatatatta--tgcattgtccttaccaactgagctaa 7872803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 7994885 - 7994935
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgag 371  Q
    |||| ||||| ||||||||||||||||||  ||| ||||||||||||||||||    
T  7994885 ggtttgaaccccagaccttacatatatta--tgttttgtccctaccaactgag 7994935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 28080697 - 28080632
Alignment:
Q  130 gtgaagattgccctatttataaacacattgtcagaccaccttttatccgacgtaaggctcttaaca 195  Q
    ||||| ||||||||| ||||||||||||||||||  || || |||||||| || || |||||||||    
T  28080697 gtgaaaattgccctacttataaacacattgtcaggtcatctcttatccgatgtgagactcttaaca 28080632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 372
Target Start/End: Original strand, 31533394 - 31533447
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagc 372  Q
    |||||||||| || ||||| |||||||||||| |||||||| || |||||||||    
T  31533394 ggttcgaaccccaaaccttgcatatattatgtatattgtccttatcaactgagc 31533447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 40187637 - 40187687
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgag 371  Q
    |||| ||||| ||||||||||||||||||  || |||||||||||||||||||    
T  40187637 ggtttgaaccgcagaccttacatatatta--tgcattgtccctaccaactgag 40187687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 23069851 - 23069912
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| |||||||||| || ||||| |||||||||||||  |||||  |||||||||||||||    
T  23069851 tgtccggggttcgaaccccataccttgcatatattatgtg--ttgtctttaccaactgagctaa 23069912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 24225979 - 24226036
Alignment:
Q  316 cgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||||||||||| |||||||||||| |||  || ||||||| ||| |||||||||||    
T  24225979 cgaggttcgaacctcggaccttacatatttta--tgcattgtccatacgaactgagctaa 24226036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 26471275 - 26471222
Alignment:
Q  320 gttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||| ||||||||| |||||||| ||||||  ||||||| |||||||||||||||    
T  26471275 gttcggacctcagactttacatattttatgt--attgtccataccaactgagctaa 26471222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 375
Target Start/End: Complemental strand, 26547715 - 26547662
Alignment:
Q  320 gttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||| ||||||||| |||||||| ||||||  ||||||| |||||||||||||||    
T  26547715 gttcggacctcagactttacatattttatgt--attgtccataccaactgagctaa 26547662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 46987153 - 46987092
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| |||||||||| | |||||| |||||||||  || ||||||| |||||||||||||||    
T  46987153 tgtccggggttcgaaccccggaccttgcatatatta--tgcattgtccttaccaactgagctaa 46987092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 10564466 - 10564520
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||| ||||||||||||||||||||||||  |||||||||| |||||||||||||||    
T  10564466 ggtttgaacctcagaccttacatatatta--tgtattgtccataccaactgagctaa 10564520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 34968000 - 34968040
Alignment:
Q  309 tgatgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  34968000 tgatggccgaggttcgaacctcaaaccttacatatattatg 34968040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 21623410 - 21623474
Alignment:
Q  309 tgatgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||| ||||||||  ||||||||||||| |||||||||  || |||||||||||||||||| ||||    
T  21623410 tgatggccgaggtttaaacctcagaccttgcatatatta--tgcattgtccctaccaactgaactaa 21623474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 324 - 374
Target Start/End: Complemental strand, 23160095 - 23160047
Alignment:
Q  324 gaacctcagaccttacatatattatgtgtattgtccctaccaactgagcta 374  Q
    ||||||| ||||||||||||||||||   ||||||||||||||||||||||    
T  23160095 gaacctcggaccttacatatattatgc--attgtccctaccaactgagcta 23160047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 32139407 - 32139345
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| |||||||||| | |||||| |||||||| | ||||||||||||| ||||||||||||    
T  32139407 tgtccggggttcgaaccccggaccttgcatatatt-tatgtattgtccctatcaactgagctaa 32139345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 43539873 - 43539821
Alignment:
Q  321 ttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||||| || ||||||||||||||  |||||||||||||||||| ||||    
T  43539873 ttcgaacctcagcccctacatatattatgt--attgtccctaccaactgaactaa 43539821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 315 - 349
Target Start/End: Complemental strand, 9783963 - 9783929
Alignment:
Q  315 ccgaggttcgaacctcagaccttacatatattatg 349  Q
    |||||||| ||||||||||||||||||||||||||    
T  9783963 ccgaggtttgaacctcagaccttacatatattatg 9783929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 9990333 - 9990296
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  9990333 tgtccgaggttcgaacctcagatcttgcatatattatg 9990296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 251
Target Start/End: Original strand, 18528326 - 18528391
Alignment:
Q  187 ctcttaacacccccc-tgaagctcatgactggacatctggagcatgaacataaatggtggatggcc 251  Q
    ||||||||||||||| | | |||||||||||||||| || |||||||  ||||||||||| |||||    
T  18528326 ctcttaacaccccccctcacgctcatgactggacatttgaagcatgactataaatggtgggtggcc 18528391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 19124614 - 19124654
Alignment:
Q  309 tgatgtccgaggttcgaacctcagaccttacatatattatgt 350  Q
    ||||||||| ||||||||||||||||||| ||||||||||||    
T  19124614 tgatgtccg-ggttcgaacctcagaccttgcatatattatgt 19124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 349
Target Start/End: Complemental strand, 37735852 - 37735819
Alignment:
Q  316 cgaggttcgaacctcagaccttacatatattatg 349  Q
    ||||||| ||||||||||||||||||||||||||    
T  37735852 cgaggtttgaacctcagaccttacatatattatg 37735819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 41037071 - 41037136
Alignment:
Q  127 gaggtgaagattg-ccctatttataaacacattgtcagaccaccttttatccgacgtaaggctctt 191  Q
    ||||||||||||| |||  |||||||||||| |||||||| | ||||||||||| ||||| |||||    
T  41037071 gaggtgaagattgtccccgtttataaacacactgtcagactatcttttatccgatgtaagactctt 41037136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 44249129 - 44249096
Alignment:
Q  146 ttataaacacattgtcagaccaccttttatccga 179  Q
    |||||||||||||||||||||| |||||||||||    
T  44249129 ttataaacacattgtcagaccatcttttatccga 44249096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 262
Target Start/End: Complemental strand, 5846354 - 5846278
Alignment:
Q  187 ctcttaacac-ccccctgaagctcatgactggacatctggagcatgaacataaatggtggatggcccgataacaaaa 262  Q
    |||||||||| |||||| | ||||| || || ||||||| ||| ||||||||||||  ||||| |||||||||||||    
T  5846354 ctcttaacacaccccctcatgctcaggattgcacatctgaagcgtgaacataaatgacggatgacccgataacaaaa 5846278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 352
Target Start/End: Complemental strand, 10043846 - 10043814
Alignment:
Q  320 gttcgaacctcagaccttacatatattatgtgt 352  Q
    |||||||||||||||||||||||||| ||||||    
T  10043846 gttcgaacctcagaccttacatatataatgtgt 10043814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 10082465 - 10082408
Alignment:
Q  316 cgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||| |||||||| | |||  |||||||||||  |||||||||||||||||||||||    
T  10082465 cgaggtttgaacctcatatcttgtatatattatgt--attgtccctaccaactgagctaa 10082408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 19486703 - 19486767
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatatta-tgtgtattgtccctaccaactgagctaa 375  Q
    |||||| |||||||||| |||| ||||||||||||| | || ||||||| ||| |||||||||||    
T  19486703 tgtccggggttcgaaccccagatcttacatatattattatgcattgtccttactaactgagctaa 19486767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 19854632 - 19854571
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||||||||||||| | || ||| |||||||||  || ||||||| |||||||||||||||    
T  19854632 tgtccgaggttcgaaccccggatcttgcatatatta--tgcattgtccataccaactgagctaa 19854571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 370
Target Start/End: Complemental strand, 44221507 - 44221458
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactga 370  Q
    ||||||||||||||||||| |||||||||  || ||||||| ||||||||||    
T  44221507 ggttcgaacctcagaccttgcatatatta--tgcattgtccataccaactga 44221458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 27185540 - 27185483
Alignment:
Q  316 cgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||| ||||| |||||||| ||||||||||||  |||||||||||||||||||||||    
T  27185540 cgaggtttgaaccccagaccttgcatatattatgt--attgtccctaccaactgagctaa 27185483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 258
Target Start/End: Complemental strand, 33640317 - 33640183
Alignment:
Q  127 gaggtgaagattg-ccctatttataaacacattgtcagaccaccttttatccgacgtaaggctcttaa---cacccccctgaagctcatgactggacatc 222  Q
    ||||||||||||| ||| | ||||||||||||||||||||| | | |||||||||||  | ||||| |   |||||| || | ||  | |||||||||||    
T  33640317 gaggtgaagattgtccccacttataaacacattgtcagacctc-tcttatccgacgtgtgactctttaacacacccctctcacgcctaggactggacatc 33640219  T
Q  223 tggagcatgaacataaatggtggatggcccgataac 258  Q
    ||||||||| ||||||||||||| ||| || |||||    
T  33640218 tggagcatggacataaatggtgggtggtccaataac 33640183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 35863810 - 35863868
Alignment:
Q  315 ccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||| ||||| |||||||| |||||||||  |||||||||| |||||||||||||||    
T  35863810 ccgaggtttgaaccccagaccttgcatatatta--tgtattgtccttaccaactgagctaa 35863868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 375
Target Start/End: Complemental strand, 5117266 - 5117214
Alignment:
Q  321 ttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||||||| |||||||||||||||  |||||||||| || ||||||||||||    
T  5117266 ttcgaacctcaaaccttacatatatta--tgtattgtccttatcaactgagctaa 5117214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 55494751 - 55494696
Alignment:
Q  317 gaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagcta 374  Q
    |||||||||||| ||| ||||||||||||||  || |||||||||||||| |||||||    
T  55494751 gaggttcgaaccccagtccttacatatatta--tgcattgtccctaccaattgagcta 55494696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 2186428 - 2186478
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgag 371  Q
    |||| ||||| ||||||||||||||||||  |||||||||| |||||||||||    
T  2186428 ggtttgaaccccagaccttacatatatta--tgtattgtccataccaactgag 2186478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 15507265 - 15507302
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    |||||| | |||||||||||||||||||||||||||||    
T  15507265 tgtccgggattcgaacctcagaccttacatatattatg 15507302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 35191818 - 35191872
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||| |||||||| |||||||||  || ||||||| |||||||||||||||    
T  35191818 ggttcgaaccccagaccttgcatatatta--tgcattgtccttaccaactgagctaa 35191872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 11659582 - 11659626
Alignment:
Q  212 gactggacatctggagcatgaacataaatggtggatggcccgata 256  Q
    |||||||||| ||||||||| ||||||||||||| ||| ||||||    
T  11659582 gactggacatttggagcatggacataaatggtgggtggtccgata 11659626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 21245856 - 21245799
Alignment:
Q  316 cgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||| ||||| ||||||||||||||||||  || ||||||| |||||||| ||||||    
T  21245856 cgaggtttgaaccccagaccttacatatatta--tgcattgtccttaccaactaagctaa 21245799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 30200893 - 30200832
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| ||||||||||||| ||||| |||||||||  || ||||||| || ||||||||||||    
T  30200893 tgtccggggttcgaacctcaaaccttgcatatatta--tgcattgtccttagcaactgagctaa 30200832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 54230093 - 54230154
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| |||||||||| || ||||| |||||||||  || ||||||| |||||||||||||||    
T  54230093 tgtccggggttcgaaccccaaaccttgcatatatta--tgcattgtccttaccaactgagctaa 54230154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 15082037 - 15082088
Alignment:
Q  206 gctcatgactggacatctggagcatgaacataaatggtggatggcccgataa 257  Q
    ||||| ||||||||||||| ||| |||||||||||||||| |||||||||||    
T  15082037 gctcaagactggacatctgaagcgtgaacataaatggtgggtggcccgataa 15082088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Original strand, 6542757 - 6542826
Alignment:
Q  127 gaggtgaagattgccctatttataaacacattgtcagaccaccttttatccgacgtaaggctcttaacac 196  Q
    ||||||| |||||||| ||||||||||| |||||||||||| ||  ||||||| || || ||||||||||    
T  6542757 gaggtgatgattgccccatttataaacagattgtcagaccatctcctatccgatgtgagactcttaacac 6542826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 28592681 - 28592718
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  28592681 tgtccgaggttcgaaccccagaccttacatatattatg 28592718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 30639420 - 30639481
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||| ||||||||||||||||| |||||||||  || ||| | |||||||||||||||||    
T  30639420 tgtccgagattcgaacctcagaccttgcatatatta--tgcattattcctaccaactgagctaa 30639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 34828367 - 34828312
Alignment:
Q  319 ggttcgaacctcagaccttacata-tattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||||||||||||||||| |||||  || ||||||| |||||||||||||||    
T  34828367 ggttcgaacctcagaccttacatattatta--tgcattgtccataccaactgagctaa 34828312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 9333974 - 9334011
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    ||||||||||||||||| || |||||||||||||||||    
T  9333974 tgtccgaggttcgaaccccaaaccttacatatattatg 9334011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 371
Target Start/End: Complemental strand, 16390493 - 16390439
Alignment:
Q  315 ccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgag 371  Q
    |||||||| ||||| | ||||||||||||||||  || |||||||||||||||||||    
T  16390493 ccgaggtttgaaccccggaccttacatatatta--tgcattgtccctaccaactgag 16390439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 17151300 - 17151242
Alignment:
Q  315 ccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||| ||||| |||||||| |||||||||  ||||||||| ||||||||| ||||||    
T  17151300 ccgaggtttgaaccccagaccttgcatatatta--tgtattgtcactaccaacttagctaa 17151242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 349
Target Start/End: Complemental strand, 10778898 - 10778870
Alignment:
Q  321 ttcgaacctcagaccttacatatattatg 349  Q
    |||||||||||||||||||||||||||||    
T  10778898 ttcgaacctcagaccttacatatattatg 10778870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 145 - 201
Target Start/End: Complemental strand, 30505754 - 30505698
Alignment:
Q  145 tttataaacacattgtcagaccaccttttatccgacgtaaggctcttaacacccccc 201  Q
    |||| |||||||||||||||||| ||| ||||||| ||  | |||||||||||||||    
T  30505754 tttacaaacacattgtcagaccatcttatatccgatgtgggactcttaacacccccc 30505698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 13032360 - 13032396
Alignment:
Q  316 cgaggttcgaacctcagaccttacatatattatgtgt 352  Q
    |||||||||||||||||||||| ||||||||||||||    
T  13032360 cgaggttcgaacctcagaccttgcatatattatgtgt 13032396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 42208464 - 42208524
Alignment:
Q  313 gtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||| ||||||| |||||| |||||||||  || ||||||| |||||||||||||||    
T  42208464 gtccgaggtttgaacctcggaccttgcatatatta--tgcattgtccttaccaactgagctaa 42208524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 13575353 - 13575295
Alignment:
Q  315 ccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||||||||| || ||| ||||| |||||   |||||||||||||||||||||||    
T  13575353 ccgaggttcgaacctcggaacttgcatatgttatgc--attgtccctaccaactgagctaa 13575295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 27044884 - 27044921
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    |||||| |||| ||||||||||||||||||||||||||    
T  27044884 tgtccggggtttgaacctcagaccttacatatattatg 27044921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 30623353 - 30623299
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||| |||||||| |||||||||  || ||||||| |||||||||||||||    
T  30623353 ggttcgaaccccagaccttgcatatatta--tgcattgtccttaccaactgagctaa 30623299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 39821944 - 39821890
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||| ||||| |||||||| |||||||||||   |||||||||||||||||||||||    
T  39821944 ggtttgaaccccagaccttgcatatattatgc--attgtccctaccaactgagctaa 39821890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 1244699 - 1244760
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| |||||||||| ||||||||  ||||||||||   ||||||| |||||||||||||||    
T  1244699 tgtccggggttcgaaccccagaccttgtatatattatgc--attgtccttaccaactgagctaa 1244760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 3102375 - 3102339
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattat 348  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  3102375 tgtctgaggttcgaacctcaaaccttacatatattat 3102339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 7404838 - 7404787
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgag 371  Q
    |||||||||||||||||||| ||||||||||  | ||||| ||||||||||||    
T  7404838 ggttcgaacctcagaccttatatatattatgcat-ttgtctctaccaactgag 7404787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 317 - 349
Target Start/End: Original strand, 8078099 - 8078131
Alignment:
Q  317 gaggttcgaacctcagaccttacatatattatg 349  Q
    ||||||||||| |||||||||||||||||||||    
T  8078099 gaggttcgaacatcagaccttacatatattatg 8078131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 2705518 - 2705571
Alignment:
Q  320 gttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||||||||||||||||||||||||  |||||||| | || ||||||||||||    
T  2705518 gttcgaacctcagaccttacatatatta--tgtattgttcttatcaactgagctaa 2705571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 11017243 - 11017182
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| | ||||||||||||||||| |||||||||  || ||| |||||||||||||||||||    
T  11017243 tgtccgggattcgaacctcagaccttgcatatatta--tgcattatccctaccaactgagctaa 11017182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 312 - 374
Target Start/End: Original strand, 5195145 - 5195206
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagcta 374  Q
    |||| |||||||||||||||  || ||||||||||||| || ||||| |||||||||||||||    
T  5195145 tgtctgaggttcgaacctcaacccctacatatattatgcgt-ttgtctctaccaactgagcta 5195206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 6489067 - 6489013
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||| ||||| |||||||| |||||||||||   |||||||||||||||||||||||    
T  6489067 ggtttgaaccccagaccttgcatatattatgc--attgtccctaccaactgagctaa 6489013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 26409313 - 26409259
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||| | ||||||||||||||||  || ||||||| |||||||||||||||    
T  26409313 ggttcgaaccccggaccttacatatatta--tgcattgtccataccaactgagctaa 26409259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 31708140 - 31708177
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    ||||||||||||||||| |||||||| |||||||||||    
T  31708140 tgtccgaggttcgaaccccagaccttgcatatattatg 31708177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 348
Target Start/End: Complemental strand, 38031480 - 38031443
Alignment:
Q  311 atgtccgaggttcgaacctcagaccttacatatattat 348  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  38031480 atgtccgaaattcgaacctcagaccttacatatattat 38031443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 39143774 - 39143720
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||||||||| |||||||||||||||  || | ||||| |||||||||||||||    
T  39143774 ggttcgaacctcaaaccttacatatatta--tgcaatgtccataccaactgagctaa 39143720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 371
Target Start/End: Complemental strand, 1512914 - 1512865
Alignment:
Q  320 gttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgag 371  Q
    |||||||||| |||||||||||||||||  || ||||||||||| |||||||    
T  1512914 gttcgaaccttagaccttacatatatta--tgcattgtccctactaactgag 1512865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 350
Target Start/End: Complemental strand, 3222796 - 3222760
Alignment:
Q  314 tccgaggttcgaacctcagaccttacatatattatgt 350  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  3222796 tccggggttcgaacctcagaccttgcatatattatgt 3222760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 18391663 - 18391606
Alignment:
Q  316 cgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||||||||||| |||||| ||||| |||  || ||||||| |||||||||||||||    
T  18391663 cgaggttcgaacctcggaccttgcatatttta--tgcattgtccttaccaactgagctaa 18391606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 312 - 375
Target Start/End: Original strand, 21657392 - 21657453
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||| |||||| |||||||| |||||||||||||||  || ||||||||||| |||||| ||||    
T  21657392 tgtctgaggtttgaacctcaaaccttacatatatta--tgcattgtccctacaaactgaactaa 21657453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 24393312 - 24393251
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| ||||||||||||||||||| |||||||||  || ||||||| || ||||||||||||    
T  24393312 tgtccggggttcgaacctcagaccttgcatatatta--tgcattgtccttaacaactgagctaa 24393251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 321 - 375
Target Start/End: Original strand, 43826445 - 43826497
Alignment:
Q  321 ttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    ||||||| ||| |||||||||||||||  |||||||||| |||||||||||||||    
T  43826445 ttcgaacatcataccttacatatatta--tgtattgtccttaccaactgagctaa 43826497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 371
Target Start/End: Complemental strand, 7640718 - 7640668
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgag 371  Q
    |||||||||||||| ||||||||||||||  |||||||||| |||||| ||||    
T  7640718 ggttcgaacctcaggccttacatatatta--tgtattgtccttaccaattgag 7640668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 24592847 - 24592901
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||| ||||| |||||||| |||||||||||   |||||||||||||||||||||||    
T  24592847 ggtttgaaccccagaccttgcatatattatgc--attgtccctaccaactgagctaa 24592901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 25274830 - 25274884
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||| ||||||||||||||||||  || ||||| | |||||||||||||||    
T  25274830 ggttcgaaccccagaccttacatatatta--tgcattgttcttaccaactgagctaa 25274884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 34903584 - 34903547
Alignment:
Q  312 tgtccgaggttcgaacctcagaccttacatatattatg 349  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  34903584 tgtccggggttcgaacctcagaccttgcatatattatg 34903547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 146 - 258
Target Start/End: Original strand, 36316119 - 36316232
Alignment:
Q  146 ttataaacacattgtcagaccaccttttatccgacgtaaggctcttaacaccc-ccctgaagctcatgactggacatctggagcatgaacataaatggtg 244  Q
    ||||||||| |||||||| ||| ||| || | || ||  | |||||||||| | |||| | ||||| || || ||||||| ||| |||||||||||||||    
T  36316119 ttataaacaaattgtcaggccaacttctaactgatgtgggactcttaacacacaccctcacgctcaggattgcacatctgaagcgtgaacataaatggtg 36316218  T
Q  245 gatggcccgataac 258  Q
    | ||||||||||||    
T  36316219 ggtggcccgataac 36316232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 43117191 - 43117245
Alignment:
Q  319 ggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||| |||||||||||||| |||||||||  || ||||||| |||||||||||||||    
T  43117191 ggtttgaacctcagaccttgcatatatta--tgcattgtccttaccaactgagctaa 43117245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 332 - 375
Target Start/End: Complemental strand, 15381680 - 15381639
Alignment:
Q  332 gaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||||||||||||  ||||||||||| |||||||||||    
T  15381680 gaccttacatatattatgt--attgtccctactaactgagctaa 15381639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 375
Target Start/End: Original strand, 34191314 - 34191363
Alignment:
Q  324 gaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||| |||| ||||||||||||||   |||||||||||||||||||||||    
T  34191314 gaaccttagactttacatatattatgc--attgtccctaccaactgagctaa 34191363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 40068 - 40004
Alignment:
Q  309 tgatgtccgaggttcgaacctcagaccttacatatattatgtgtattgtccctaccaactgagctaa 375  Q
    |||||||||||||| |||||||  ||||| |||||||||  || ||||||| |||||||||||||||    
T  40068 tgatgtccgaggtttgaacctctaaccttgcatatatta--tgcattgtccataccaactgagctaa 40004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 41189 - 41223
Alignment:
Q  277 agaggctttgataccatcttagaaatcgtagttga 311  Q
    ||||||| |||||||||||||||||||||||||||    
T  41189 agaggctctgataccatcttagaaatcgtagttga 41223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 321 - 349
Target Start/End: Original strand, 119201 - 119229
Alignment:
Q  321 ttcgaacctcagaccttacatatattatg 349  Q
    |||||||||||||||||||||||||||||    
T  119201 ttcgaacctcagaccttacatatattatg 119229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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