View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_high_5 (Length: 419)
Name: NF19891_high_5
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 35511013 - 35510760
Alignment:
| Q |
1 |
ttcagtcaaagcatatgtaacaagcatatcattcatagcaagtactctagttttcacaatttagaatcagaaggtttgaaattttaataatgcttgtaag |
100 |
Q |
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| T |
35511013 |
ttcagtcaaagcatatgtaacaagcatatcattcatagcaagtactctagttttcacaatttagaatcagaaggtttgaaattttaataatgcttgtaag |
35510914 |
T |
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| Q |
101 |
taaaatacaattctcctccatctccatgcccctcgtgttcaaactagttgaaaaatatttagtggctactccataaactgcatatttcttggttaatcac |
200 |
Q |
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| T |
35510913 |
taaaatacaattctcctccatctccatgcccctcgtgttcaaactagttgaaaaatatttagtggctactccataaactgcatatttcttggttaatcac |
35510814 |
T |
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| Q |
201 |
tcaataacaattaatgctgtaaattcactttcaagggaataattagctcacaac |
254 |
Q |
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| T |
35510813 |
tcaataacaattaatgctgtaaattcactttcaagggaataattagctcacaac |
35510760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 254 - 401
Target Start/End: Complemental strand, 35510737 - 35510590
Alignment:
| Q |
254 |
cttaaaaaacggcatgcgaactaaaaagtaaaattaagcatgaacccgtgtatccacgatctacgattagagtctaactcgtcgaagtatttaagaggtt |
353 |
Q |
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| T |
35510737 |
cttaaaaaacggcatgcgaactaaaaagtaaaattaagcatgaacccgtgtatccacgatctacggttagagtctaactcgtcgaagtatttaagaggtt |
35510638 |
T |
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| Q |
354 |
gacatttcccaaatgacactcttctagacctaggacaacatgcttaag |
401 |
Q |
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| T |
35510637 |
gacatttcccaaatgagattcttctagacctaggacaacatgcttaag |
35510590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 35502387 - 35502295
Alignment:
| Q |
167 |
tactccataaactgcatatttcttggttaatcactcaataaca---attaatgctgtaaattcact---ttcaagggaataattagctcacaa |
253 |
Q |
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|||| ||||||||||||||||||| |||| |||||||||||| | |||||||||||||| || |||||||||||||||||||||||| |
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| T |
35502387 |
tacttcataaactgcatatttcttaattaaacactcaataacaactaataatgctgtaaattacctttcttcaagggaataattagctcacaa |
35502295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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