View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19891_low_10 (Length: 319)

Name: NF19891_low_10
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19891_low_10
NF19891_low_10
[»] chr3 (17 HSPs)
chr3 (151-305)||(53714486-53714640)
chr3 (152-292)||(11266981-11267121)
chr3 (152-292)||(50304300-50304438)
chr3 (152-281)||(11267605-11267734)
chr3 (231-297)||(49161712-49161778)
chr3 (226-309)||(30593813-30593897)
chr3 (155-199)||(31891261-31891305)
chr3 (152-199)||(50305469-50305516)
chr3 (152-198)||(44993755-44993801)
chr3 (152-199)||(1127364-1127411)
chr3 (166-253)||(44385177-44385264)
chr3 (151-192)||(10343329-10343370)
chr3 (150-199)||(23379330-23379379)
chr3 (152-253)||(42146800-42146900)
chr3 (151-188)||(44384513-44384550)
chr3 (151-199)||(1128227-1128275)
chr3 (153-253)||(51492404-51492504)
[»] chr1 (15 HSPs)
chr1 (152-305)||(45597624-45597777)
chr1 (1-151)||(49553695-49553844)
chr1 (151-292)||(13536906-13537045)
chr1 (164-287)||(38149975-38150091)
chr1 (152-199)||(22425522-22425569)
chr1 (152-199)||(22862601-22862648)
chr1 (152-199)||(51129373-51129420)
chr1 (152-207)||(51609381-51609436)
chr1 (150-188)||(4530191-4530229)
chr1 (152-253)||(4530856-4530957)
chr1 (226-297)||(16264657-16264728)
chr1 (152-199)||(22424796-22424843)
chr1 (226-297)||(49304677-49304748)
chr1 (152-194)||(4626346-4626388)
chr1 (154-199)||(22861876-22861921)
[»] scaffold0070 (1 HSPs)
scaffold0070 (149-292)||(2615-2758)
[»] chr8 (9 HSPs)
chr8 (152-292)||(5432845-5432981)
chr8 (226-297)||(37785006-37785077)
chr8 (152-278)||(511365-511491)
chr8 (226-297)||(2707577-2707648)
chr8 (152-199)||(8491468-8491515)
chr8 (226-297)||(35971212-35971283)
chr8 (152-199)||(45163118-45163165)
chr8 (151-199)||(788473-788521)
chr8 (226-274)||(45274934-45274982)
[»] chr2 (14 HSPs)
chr2 (231-297)||(23875318-23875384)
chr2 (231-298)||(6084949-6085016)
chr2 (152-278)||(6198826-6198951)
chr2 (226-297)||(29100999-29101070)
chr2 (152-199)||(5141848-5141895)
chr2 (150-193)||(5142561-5142604)
chr2 (152-199)||(17946841-17946888)
chr2 (226-297)||(23989296-23989367)
chr2 (152-194)||(30902179-30902221)
chr2 (150-199)||(2992000-2992049)
chr2 (151-196)||(17947940-17947985)
chr2 (151-199)||(2992856-2992904)
chr2 (151-199)||(6197914-6197962)
chr2 (152-188)||(38065546-38065582)
[»] chr7 (19 HSPs)
chr7 (231-297)||(36845106-36845172)
chr7 (152-199)||(36661685-36661732)
chr7 (239-292)||(29511808-29511861)
chr7 (226-297)||(1484019-1484090)
chr7 (152-253)||(37693507-37693608)
chr7 (152-199)||(29511311-29511358)
chr7 (226-297)||(33142892-33142963)
chr7 (226-297)||(35241294-35241365)
chr7 (226-297)||(37997084-37997155)
chr7 (226-297)||(47490812-47490883)
chr7 (226-286)||(6484542-6484602)
chr7 (151-199)||(19431089-19431137)
chr7 (152-188)||(37692844-37692880)
chr7 (226-297)||(2947492-2947563)
chr7 (152-199)||(28868831-28868878)
chr7 (226-292)||(328289-328354)
chr7 (151-253)||(9379742-9379844)
chr7 (226-274)||(12653830-12653878)
chr7 (226-274)||(37625748-37625796)
[»] chr5 (11 HSPs)
chr5 (231-297)||(42650835-42650901)
chr5 (226-297)||(35470879-35470950)
chr5 (226-297)||(41197034-41197105)
chr5 (153-199)||(18669867-18669913)
chr5 (150-199)||(19855062-19855111)
chr5 (152-199)||(6353684-6353731)
chr5 (152-199)||(19854336-19854383)
chr5 (152-189)||(6354696-6354733)
chr5 (232-292)||(16049743-16049803)
chr5 (151-199)||(41784621-41784669)
chr5 (151-191)||(41785491-41785531)
[»] chr6 (6 HSPs)
chr6 (226-297)||(14800488-14800559)
chr6 (152-199)||(1528561-1528608)
chr6 (152-199)||(6841957-6842004)
chr6 (226-297)||(26419970-26420041)
chr6 (154-199)||(1529412-1529457)
chr6 (152-199)||(6841232-6841279)
[»] chr4 (14 HSPs)
chr4 (152-199)||(49708726-49708773)
chr4 (152-199)||(55879794-55879841)
chr4 (241-305)||(22256378-22256442)
chr4 (226-297)||(6231047-6231118)
chr4 (152-199)||(32893604-32893651)
chr4 (152-199)||(49346106-49346153)
chr4 (226-297)||(56396510-56396581)
chr4 (150-199)||(49708017-49708066)
chr4 (152-199)||(37142713-37142760)
chr4 (154-199)||(17088719-17088764)
chr4 (154-199)||(17096694-17096739)
chr4 (150-199)||(17978261-17978310)
chr4 (151-199)||(17979115-17979163)
chr4 (152-188)||(50708992-50709028)
[»] scaffold0015 (1 HSPs)
scaffold0015 (226-297)||(35034-35105)
[»] scaffold0016 (1 HSPs)
scaffold0016 (173-253)||(67937-68017)


Alignment Details
Target: chr3 (Bit Score: 143; Significance: 4e-75; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 151 - 305
Target Start/End: Original strand, 53714486 - 53714640
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctc 250  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53714486 tggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctc 53714585  T
Q  251 tcaacattatattatttttacattatcttccatcatccttctttttcacctccat 305  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  53714586 tcaacattatattatttttacattatcttccatcatccttctctatcacctccat 53714640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 152 - 292
Target Start/End: Original strand, 11266981 - 11267121
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||||||||| ||| | ||| |||||||||||||||||||| |||||||| |||||||    | |||||||||||||||||||||||||||||||||||    
T  11266981 ggtggcatttagggtagatgaaggaaagaatttcccaccatgagaaagatattttttaagcactagatcaaagaaagaccatagtattatcatagtctct 11267080  T
Q  252 caacattatattatttttacattatcttccatcatccttct 292  Q
    |||||||||||||||||||||| ||||| ||||||||||||    
T  11267081 caacattatattatttttacatcatctttcatcatccttct 11267121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 152 - 292
Target Start/End: Original strand, 50304300 - 50304438
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||||||||| ||||||||||||||| ||||||||||||| | ||||||| ||||||||  || ||||||| || ||||||| || ||||  |||||||    
T  50304300 ggtggcatttagggtgggtgagggaaataatttcccaccatagaaaagatattttttaaccattagatcaaaaaaggaccataataatatc--agtctct 50304397  T
Q  252 caacattatattatttttacattatcttccatcatccttct 292  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  50304398 caacattatattatttttccatcatcttccatcatccttct 50304438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 281
Target Start/End: Complemental strand, 11267734 - 11267605
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||| |||  |||||||  || ||| ||| ||||| |||| | |||||||| ||  |    
T  11267734 ggtggcatttagggtgggtgagggaaagaatttcctaccatgggaaa-ataaattttaaccattagattaaataaagagcatactcttatcatactccat 11267636  T
Q  252 caacattatatta-tttttacattatcttcc 281  Q
    || || ||||||| |||||||| ||||||||    
T  11267635 caccactatattattttttacactatcttcc 11267605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 49161778 - 49161712
Alignment:
Q  231 catagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||| |||||||||||||| |||||| || |||||||||| ||||||||||||||||||||| ||||    
T  49161778 cataatattatcatagtctttcaacactagattatttttatattatcttccatcatccttctctttc 49161712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 226 - 309
Target Start/End: Original strand, 30593813 - 30593897
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttcacc-tccatgtct 309  Q
    ||||| ||| |||||||||| ||||| ||||||| |||||||||||| ||| |||||||||| |||| |||| || |||||||||    
T  30593813 aagactataatattatcatactctctaaacattagattatttttacaatatgttccatcatctttctctttccccatccatgtct 30593897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 31891261 - 31891305
Alignment:
Q  155 ggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    |||||||| |||||||||||||||||||||||| |||||||||||    
T  31891261 ggcatttagggtgggtgagggaaagaatttccctccatgggaaag 31891305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 50305516 - 50305469
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| ||||    
T  50305516 ggtggcatttagggtgggtgaggaaaagaatttcccaccatggaaaag 50305469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 44993801 - 44993755
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaa 198  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  44993801 ggtggcatttagggtgggtgagggaaagagtttcctaccatgggaaa 44993755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 1127364 - 1127411
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||| | |||||||||||| |||||    
T  1127364 ggtggcatttagggtgggtgagggaaaaagtttcccaccatgagaaag 1127411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 44385264 - 44385177
Alignment:
Q  166 tgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctctca 253  Q
    |||||||||||||||||| ||||| ||||||||| |  ||| ||||  || |||||||  ||||||||||| |||| |||| ||||||    
T  44385264 tgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactctca 44385177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 192
Target Start/End: Original strand, 10343329 - 10343370
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccat 192  Q
    |||||||||||| ||||||||||||||||| ||| |||||||    
T  10343329 tggtggcatttagggtgggtgagggaaagatttttccaccat 10343370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 23379330 - 23379379
Alignment:
Q  150 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||||| ||||||| ||||||||| |||||||| || ||||||    
T  23379330 ttggtggcatttagggtgggtaagggaaagattttcccactataggaaag 23379379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 253
Target Start/End: Original strand, 42146800 - 42146900
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||||||||| ||||||   |||||||| |||||||||||||||||| |  ||| |||   ||||||||||  ||||  ||||| ||||||||||||||    
T  42146800 ggtggcatttagggtgggat-gggaaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctct 42146898  T
Q  252 ca 253  Q
    ||    
T  42146899 ca 42146900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 44384513 - 44384550
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttccca 188  Q
    |||||||||||| ||||||||||| |||||||||||||    
T  44384513 tggtggcatttagggtgggtgaggaaaagaatttccca 44384550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 1128275 - 1128227
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    |||||||||||| |||||||||| |||||| |||| ||| |||||||||    
T  1128275 tggtggcatttagggtgggtgagagaaagagtttctcactatgggaaag 1128227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 253
Target Start/End: Complemental strand, 51492504 - 51492404
Alignment:
Q  153 gtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctctc 252  Q
    |||||||||| ||||||   | |||||| |||||||||||||||||| |  ||| |||   ||||||||||  ||||  ||||| |||||||||||||||    
T  51492504 gtggcatttagggtgggatggagaaagattttcccaccatgggaaagttgatttctaatccttggatcaaatgaagagtatagttttatcatagtctctc 51492405  T
Q  253 a 253  Q
    |    
T  51492404 a 51492404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 152 - 305
Target Start/End: Original strand, 45597624 - 45597777
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45597624 ggtggcatttagggtgggtgagggaaagaatttcccaccataggaaagatactttttaatggttggatcaaagaaagaccatagtattatcatagtctct 45597723  T
Q  252 caacattatattatttttacattatcttccatcatccttctttttcacctccat 305  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  45597724 caacattatattatttttacattatcttccatcatccttctctttcacctccat 45597777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 49553695 - 49553844
Alignment:
Q  1 taaaaagtgatatcataatttataggctgaataaatttt-ggtccctataagtatgtattttaagggtcttgttaacgagtgtctccgaaagacactctt 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||  |||||||||    
T  49553695 taaaaagtgatatcataatttataggctgaataaatttttggtccctataagtatgtattttaagggtcttgttaacgagtatcttcga--gacactctt 49553792  T
Q  100 caataaataaactcaaatacttcatctaaatgtatctttatcataaatactt 151  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  49553793 caataaataaactcaaatatttcatctaaatgtatcttcatcataaatactt 49553844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 151 - 292
Target Start/End: Complemental strand, 13537045 - 13536906
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctc 250  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||   || |||||||||||||||   ||||||| ||||||||    
T  13537045 tggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaagatattttttaagcattagatcaaagaaagacc--ggtattatgatagtctc 13536948  T
Q  251 tcaacattatattatttttacattatcttccatcatccttct 292  Q
    ||||| ||||||||||||||||| ||||||||||||||||||    
T  13536947 tcaacgttatattatttttacatcatcttccatcatccttct 13536906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 287
Target Start/End: Original strand, 38149975 - 38150091
Alignment:
Q  164 ggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctctcaacattatatt 263  Q
    ||||||||||||||||||||||||       ||||||||||||| ||   || ||||||| || ||| ||  || ||||||||||||||||||||| |||    
T  38149975 ggtgggtgagggaaagaatttccc-------gaaagatacttttaaatcattagatcaaataatgactatgataatatcatagtctctcaacattaaatt 38150067  T
Q  264 atttttacattatcttccatcatc 287  Q
     |||||  ||||||||||||||||    
T  38150068 ctttttctattatcttccatcatc 38150091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 22425569 - 22425522
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  22425569 ggtggcatttaggatgggtgagggaaagaatttcccaccataggaaag 22425522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 22862648 - 22862601
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  22862648 ggtggcatttaggatgggtgagggaaagaatttcccaccataggaaag 22862601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 51129373 - 51129420
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  51129373 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaag 51129420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 207
Target Start/End: Original strand, 51609381 - 51609436
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttt 207  Q
    ||||||||||| ||||||||||||||||| |||| || ||||||||||||| ||||    
T  51609381 ggtggcatttagggtgggtgagggaaagagtttctcaacatgggaaagatattttt 51609436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 188
Target Start/End: Original strand, 4530191 - 4530229
Alignment:
Q  150 ttggtggcatttacggtgggtgagggaaagaatttccca 188  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  4530191 ttggtggcatttagggtgggtgagggaaagaatttccca 4530229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 4530957 - 4530856
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||| ||||| |||||||||||||||||||| ||||| ||||||||| |  ||| ||||  || |||||||  ||||||||| | |||| |||| ||||    
T  4530957 ggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatatttttattatagactct 4530858  T
Q  252 ca 253  Q
    ||    
T  4530857 ca 4530856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 16264728 - 16264657
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||| ||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  16264728 aagatcatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 16264657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 22424796 - 22424843
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| |||||||||||||||||||| |||| ||| ||||||    
T  22424796 ggtggcatttagggtgggtgagggaaagaattccccatcataggaaag 22424843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 49304748 - 49304677
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    ||||| |||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  49304748 aagactatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 49304677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 4626388 - 4626346
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgg 194  Q
    ||||||||||| |||||| |||||||| |||||||||||||||    
T  4626388 ggtggcatttagggtgggagagggaaaaaatttcccaccatgg 4626346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Original strand, 22861876 - 22861921
Alignment:
Q  154 tggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||| |||||||||||||||||||| |||| ||| ||||||    
T  22861876 tggcatttagggtgggtgagggaaagaattccccatcataggaaag 22861921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 149 - 292
Target Start/End: Complemental strand, 2758 - 2615
Alignment:
Q  149 cttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtc 248  Q
    |||||||||||||| ||| |||||||||||||||| |||||||||| ||| ||| ||||||||  ||  ||||| |||| ||||||||||||| ||||||    
T  2758 cttggtggcatttagggttggtgagggaaagaattccccaccatggtaaatatattttttaactattttatcaacgaaaaaccatagtattataatagtc 2659  T
Q  249 tctcaacattatattatttttacattatcttccatcatccttct 292  Q
    |||||| |||||||| |||||| ||||||||||||||| |||||    
T  2658 tctcaatattatattctttttatattatcttccatcatacttct 2615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 292
Target Start/End: Original strand, 5432845 - 5432981
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||||||||| |||||||||||||||||||||| || |    ||||||||||||| |||  || ||||||| |||||| || ||| |||||||||||||    
T  5432845 ggtggcatttagggtgggtgagggaaagaatttctcatc----gaaagatacttttaaaccattagatcaaataaagactatggtaatatcatagtctct 5432940  T
Q  252 caacattatattatttttacattatcttccatcatccttct 292  Q
    |||||||| ||||||||| |||||||||||||||| |||||    
T  5432941 caacattagattattttttcattatcttccatcatgcttct 5432981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 37785006 - 37785077
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||||||| ||| |||||||||| |||| ||||    
T  37785006 aagaccatagtattatcatactctttaaacattagattatttttacactatgttccatcatctttctctttc 37785077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 152 - 278
Target Start/End: Complemental strand, 511491 - 511365
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||||||||| ||||||||| ||||||||||||||| ||| |||||| |  ||| ||||  ||||||||||  |||| |||| | |||| |||| ||||    
T  511491 ggtggcatttagggtgggtgaaggaaagaatttcccatcataggaaagttgatttataacctttggatcaaatgaagagcataattttattataggctct 511392  T
Q  252 caacattatattatttttacattatct 278  Q
    || || || ||| |||| ||| |||||    
T  511391 caccactagatttttttcacactatct 511365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 2707648 - 2707577
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| |||  || |||||||||| |||| ||||    
T  2707648 aagaccatagtattatcatactctttaaacattagattattttcacaccatgttccatcatctttctctttc 2707577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 8491468 - 8491515
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||| |||||||| || ||||||    
T  8491468 ggtggcatttagggtgggtgagggaaagattttcccactataggaaag 8491515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 35971212 - 35971283
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| | | | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  35971212 aagaccatagtattatcatactttttaaacattagattattttcacactatgttccatcatctttctctttc 35971283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 45163165 - 45163118
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||| ||||||| ||| ||||||    
T  45163165 ggtggcatttagggtgggtgagggaaagattttcccatcataggaaag 45163118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 788521 - 788473
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||| |||||| ||||||||||||||||| |||||||  |||||||||    
T  788521 tggtgacatttagggtgggtgagggaaagagtttcccatgatgggaaag 788473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 45274982 - 45274934
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacatt 274  Q
    |||||||| ||||||||||| |||||||||| || ||| ||||||||||    
T  45274982 aagaccatggtattatcatactctctcaacactacattctttttacatt 45274934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 23875318 - 23875384
Alignment:
Q  231 catagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||    
T  23875318 cataatattatcatagtctttcaacactagattatttttacattatcttccatcatccttctttttc 23875384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 298
Target Start/End: Original strand, 6084949 - 6085016
Alignment:
Q  231 catagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttca 298  Q
    |||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||    
T  6084949 cataatattatcatagtctttcaacactagattatttttacattatcttccatcatccttctctttca 6085016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 278
Target Start/End: Complemental strand, 6198951 - 6198826
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||||||||| ||||||||||||||||||||||||| ||| |||||| |  ||| ||||  |||||||||| ||||| |||| | |||| |||| ||||    
T  6198951 ggtggcatttagggtgggtgagggaaagaatttcccatcataggaaagttgatttataacctttggatcaaataaagagcataattttattataggctct 6198852  T
Q  252 caacattatattatttttacattatct 278  Q
    || || || ||| |||||||| |||||    
T  6198851 caccactagatt-tttttacactatct 6198826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 29101070 - 29100999
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | |||||||||||||||| ||| ||| |||||||||| |||| ||||    
T  29101070 aagaccatagtattatcatactctttaaacattatattattttcacactatgttccatcatcattctctttc 29100999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 5141848 - 5141895
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||||||    
T  5141848 ggtggcatttagggtgggtgagggaaagaattccccatcatgggaaag 5141895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 5142604 - 5142561
Alignment:
Q  150 ttggtggcatttacggtgggtgagggaaagaatttcccaccatg 193  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||    
T  5142604 ttggtggcatttagggtgggtgagggaaagaattttccaccatg 5142561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 17946841 - 17946888
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  17946841 ggtggcatttagggtgggtgagggaaagaattttccatcatgggaaag 17946888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 23989367 - 23989296
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||| ||||||||||||||| ||| | ||||||| |||||||| ||||||| |||||||||| |||| ||||    
T  23989367 aagatcatagtattatcatactctttaaacattagattattttcacattatgttccatcatctttctctttc 23989296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 194
Target Start/End: Complemental strand, 30902221 - 30902179
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgg 194  Q
    ||||||||||| ||||||||||||||||| ||||| |||||||    
T  30902221 ggtggcatttagggtgggtgagggaaagagtttcctaccatgg 30902179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 2992000 - 2992049
Alignment:
Q  150 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||||| |||||| | |||||||| ||||||| ||||||||||    
T  2992000 ttggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaag 2992049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 17947985 - 17947940
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatggga 196  Q
    |||||||||||| | ||||||||||||||| |||||||| ||||||    
T  17947985 tggtggcatttaggatgggtgagggaaagagtttcccactatggga 17947940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 2992904 - 2992856
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    |||||||||||| ||||||||||||||||| ||| |||| |||| ||||    
T  2992904 tggtggcatttagggtgggtgagggaaagagttttccactatggaaaag 2992856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 6197914 - 6197962
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    |||||||||||| ||||||| |||||||||||| ||||  |||||||||    
T  6197914 tggtggcatttagggtgggtaagggaaagaattccccattatgggaaag 6197962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 38065546 - 38065582
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttccca 188  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  38065546 ggtggcatttagggtgggtgagggaaagagtttccca 38065582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 297
Target Start/End: Complemental strand, 36845172 - 36845106
Alignment:
Q  231 catagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||| ||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| ||||    
T  36845172 cataatattatcatagtccctcaacactagattatttttacattatcttccatcatccttctctttc 36845106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 36661685 - 36661732
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  36661685 ggtggcatttagggtgggtgagggaaagaatttcccaccatgggaaag 36661732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 29511861 - 29511808
Alignment:
Q  239 tatcatagtctctcaacattatattatttttacattatcttccatcatccttct 292  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  29511861 tatcatagtctctcaacattagattatttttacatcatcttccatcatctttct 29511808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 1484019 - 1484090
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||||||| ||| |||||||||| |||| ||||    
T  1484019 aagaccatagtattatcatactctttaaacattagattatttttacactatgttccatcatctttctctttc 1484090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 253
Target Start/End: Complemental strand, 37693608 - 37693507
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctct 251  Q
    ||||| ||||| |||||||||||||||||||| ||||| ||||||||| |  ||| ||||  || |||||||  ||||||||||| |||| |||| ||||    
T  37693608 ggtggtatttagggtgggtgagggaaagaattccccacaatgggaaagttgatttataactcttagatcaaatgaagaccatagttttattatagactct 37693509  T
Q  252 ca 253  Q
    ||    
T  37693508 ca 37693507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 29511311 - 29511358
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  29511311 ggtggcatttagggtgggtgagggaaagaatttctcaccatggaaaag 29511358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 33142963 - 33142892
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  33142963 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 33142892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 35241365 - 35241294
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    ||||| |||||||||||||| | ||| ||||||| |||||||||||| ||| |||||||||| |||| ||||    
T  35241365 aagactatagtattatcatattttctaaacattaaattatttttacaatatgttccatcatctttctctttc 35241294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 37997084 - 37997155
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  37997084 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 37997155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 47490812 - 47490883
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  47490812 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 47490883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 6484602 - 6484542
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcat 286  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||    
T  6484602 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcat 6484542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 19431089 - 19431137
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    |||||||||||| ||||||||||||||||| |||||||  |||||||||    
T  19431089 tggtggcatttagggtgggtgagggaaagagtttcccatgatgggaaag 19431137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 37692844 - 37692880
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttccca 188  Q
    ||||||||||| |||||||||||||||||||||||||    
T  37692844 ggtggcatttagggtgggtgagggaaagaatttccca 37692880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 2947563 - 2947492
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||| ||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  2947563 aagaccatagtattattatactctttaaacattagattattttcacactatgttccatcatctttctctttc 2947492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 28868831 - 28868878
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||||||| || |||||| ||||    
T  28868831 ggtggcatttagggtgggtgagggaaagaattttcctccatggaaaag 28868878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 328289 - 328354
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttct 292  Q
    |||||||||||||||  ||| |||||||||| || |||||||||||| ||| ||||||||| |||||    
T  328289 aagaccatagtattaa-atactctctcaacactagattatttttacactatgttccatcattcttct 328354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 253
Target Start/End: Complemental strand, 9379844 - 9379742
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctc 250  Q
    |||||||||||| ||||||   |||||||| ||| |||| ||||||||| |  ||| |||   ||||||||||  |||| |||||| |||||||||||||    
T  9379844 tggtggcatttagggtgggatggggaaagatttttccactatgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctc 9379745  T
Q  251 tca 253  Q
    |||    
T  9379744 tca 9379742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 12653830 - 12653878
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacatt 274  Q
    |||||||| ||||||||||| |||||||||| || ||| ||||||||||    
T  12653830 aagaccatggtattatcatactctctcaacactacattctttttacatt 12653878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 37625748 - 37625796
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacatt 274  Q
    |||||||| ||||||||||| |||||||||| || ||| ||||||||||    
T  37625748 aagaccatggtattatcatactctctcaacactacattctttttacatt 37625796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 297
Target Start/End: Original strand, 42650835 - 42650901
Alignment:
Q  231 catagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||| |||||||||||||| |||||| || |||||||||||||||||||||||||||||||| ||||    
T  42650835 cataatattatcatagtctttcaacactagattatttttacattatcttccatcatccttctctttc 42650901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 35470879 - 35470950
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  35470879 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 35470950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 41197105 - 41197034
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  41197105 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 41197034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 199
Target Start/End: Original strand, 18669867 - 18669913
Alignment:
Q  153 gtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    |||||||||| ||||||||||||||||| |||||||||||| |||||    
T  18669867 gtggcatttagggtgggtgagggaaagagtttcccaccatgagaaag 18669913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 199
Target Start/End: Complemental strand, 19855111 - 19855062
Alignment:
Q  150 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||||| |||||||||||||||||||| |||| ||| ||||||    
T  19855111 ttggtggcatttagggtgggtgagggaaagaattccccatcataggaaag 19855062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 6353684 - 6353731
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||| ||||||| ||| ||||||    
T  6353684 ggtggcatttagggtgggtgagggaaagattttcccatcataggaaag 6353731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 19854336 - 19854383
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    |||||||||||   ||||||||||||||||||||||||||| ||||||    
T  19854336 ggtggcatttagaatgggtgagggaaagaatttcccaccataggaaag 19854383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 6354733 - 6354696
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccac 189  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  6354733 ggtggcatttagggtgggtgagggaaagattttcccac 6354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 292
Target Start/End: Original strand, 16049743 - 16049803
Alignment:
Q  232 atagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttct 292  Q
    |||||||||||||| ||||| || |||| |||||||||||| ||| || ||||||| ||||    
T  16049743 atagtattatcatactctctaaatattagattatttttacaatatgtttcatcatctttct 16049803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Original strand, 41784621 - 41784669
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    |||||||||||| ||||||||||||||||| ||| | || |||||||||    
T  41784621 tggtggcatttagggtgggtgagggaaagagttttctactatgggaaag 41784669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 41785531 - 41785491
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccacca 191  Q
    |||||||||||| ||||||||||||||||| |||| |||||    
T  41785531 tggtggcatttagggtgggtgagggaaagagtttctcacca 41785491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 14800559 - 14800488
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | |||||||||||||||| ||| ||| |||||||||| |||| ||||    
T  14800559 aagaccatagtattatcatactctttaaacattatattattttcacactatgttccatcatctttctctttc 14800488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 1528561 - 1528608
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||| |||||||| |||||||||    
T  1528561 ggtggcatttagggtgggtgagggaaagagtttcccactatgggaaag 1528608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 6842004 - 6841957
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| | ||||||||||||||||||||||||||| ||||||    
T  6842004 ggtggcatttaggatgggtgagggaaagaatttcccaccataggaaag 6841957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 26419970 - 26420041
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  26419970 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 26420041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 1529457 - 1529412
Alignment:
Q  154 tggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||| ||||||||||||||||| |||||||||||| |||||    
T  1529457 tggcatttagggtgggtgagggaaagagtttcccaccatgagaaag 1529412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 6841232 - 6841279
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| |||||||||||||||||||| |||| ||| ||||||    
T  6841232 ggtggcatttagggtgggtgagggaaagaattccccatcataggaaag 6841279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 49708773 - 49708726
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  49708773 ggtggcatttagggtgggtgagggaaagaatttcccaccatggaaaag 49708726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 55879794 - 55879841
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||    
T  55879794 ggtggcatttagggtgggtgagggaaataatttcccaccatgggaaag 55879841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 22256442 - 22256378
Alignment:
Q  241 tcatagtctctcaacattatattatttttacattatcttccatcatccttctttttcacctccat 305  Q
    ||||||||||||||||||| ||| |||||  ||||||||||||||||||||| | || |||||||    
T  22256442 tcatagtctctcaacattagattctttttctattatcttccatcatccttctctctcccctccat 22256378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 6231118 - 6231047
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  6231118 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 6231047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 32893604 - 32893651
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  32893604 ggtggcatttagggtgggtgagggaaagaattttccatcatgggaaag 32893651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 199
Target Start/End: Original strand, 49346106 - 49346153
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  49346106 ggtggcatttagggtgggtgagggaaagaattttccatcatgggaaag 49346153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Complemental strand, 56396581 - 56396510
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  56396581 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 56396510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 49708017 - 49708066
Alignment:
Q  150 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||| ||||    
T  49708017 ttggtggcatttagggtgggtgagggaaagaattccccatcatggaaaag 49708066  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 152 - 199
Target Start/End: Complemental strand, 37142760 - 37142713
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||| |||||||| |||||||| ||||||| ||||||||||    
T  37142760 ggtggcatttagggtgggtgggggaaagagtttcccaacatgggaaag 37142713  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 17088764 - 17088719
Alignment:
Q  154 tggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||| ||||||||||||||||||||  ||||||| ||||||    
T  17088764 tggcatttagggtgggtgagggaaagaattctccaccataggaaag 17088719  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 199
Target Start/End: Complemental strand, 17096739 - 17096694
Alignment:
Q  154 tggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||| ||||||||||||||||||||  ||||||| ||||||    
T  17096739 tggcatttagggtgggtgagggaaagaattctccaccataggaaag 17096694  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 199
Target Start/End: Original strand, 17978261 - 17978310
Alignment:
Q  150 ttggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    ||||||||||||| |||||| | |||||||| ||||||| ||||||||||    
T  17978261 ttggtggcatttagggtgggcgggggaaagagtttcccaacatgggaaag 17978310  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 199
Target Start/End: Complemental strand, 17979163 - 17979115
Alignment:
Q  151 tggtggcatttacggtgggtgagggaaagaatttcccaccatgggaaag 199  Q
    |||||||||||| ||||||||||||||||| ||| |||| |||| ||||    
T  17979163 tggtggcatttagggtgggtgagggaaagagttttccactatggaaaag 17979115  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 50708992 - 50709028
Alignment:
Q  152 ggtggcatttacggtgggtgagggaaagaatttccca 188  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  50708992 ggtggcatttagggtgggtgaggcaaagaatttccca 50709028  T

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Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 297
Target Start/End: Original strand, 35034 - 35105
Alignment:
Q  226 aagaccatagtattatcatagtctctcaacattatattatttttacattatcttccatcatccttctttttc 297  Q
    |||||||||||||||||||| ||| | ||||||| |||||||| ||| ||| |||||||||| |||| ||||    
T  35034 aagaccatagtattatcatactctttaaacattagattattttcacactatgttccatcatctttctctttc 35105  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 68017 - 67937
Alignment:
Q  173 gggaaagaatttcccaccatgggaaagatactttttaacggttggatcaaagaaagaccatagtattatcatagtctctca 253  Q
    |||||||| ||||||||| |||||||| |  ||| |||   ||||||||||  |||| |||||| ||||||||||||||||    
T  68017 gggaaagattttcccaccttgggaaagttgatttctaatccttggatcaaatgaagagcatagttttatcatagtctctca 67937  T

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