View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_low_16 (Length: 267)
Name: NF19891_low_16
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 40958003 - 40957769
Alignment:
| Q |
16 |
atgcaccacacacgtatgcttaacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacct |
115 |
Q |
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| T |
40958003 |
atgcaccacacacgtatgcttaacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacct |
40957904 |
T |
|
| Q |
116 |
ccttttttctctgcttcatatggacggtaaaaccactgccctgtgatcattaaggtgtcattcggggattgtgtaatgtcctgacagaaaaacatctccg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40957903 |
ccttttttctctgcttcatatggacggtaaaaccactgacctgtgatcattaaggtgtcattgggggattgtgtaatgtcctgacagaaaaacatctccg |
40957804 |
T |
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| Q |
216 |
gaatcagaaaattgaaaagcataaaactctatgtt |
250 |
Q |
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| T |
40957803 |
gaatcagaaaattgaaaagcataaaactctatgtt |
40957769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 40945010 - 40944861
Alignment:
| Q |
16 |
atgcaccacacacgtatgcttaacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacct |
115 |
Q |
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||||||||||||| ||||| ||||||||||||||||||| | ||| |||||||||||||| | | |||||| || ||| ||||||||| |||||||| |
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| T |
40945010 |
atgcaccacacacttatgcataacagattctgcaggaacctcatctcggtggaaactataaaacagctctctggtgtcaacggattgccagctaccacct |
40944911 |
T |
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| Q |
116 |
ccttttttctctgcttcatatggacggtaaaaccactgccctgtgatcat |
165 |
Q |
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| T |
40944910 |
ccctttttttctgcttcatctggacggtagaaccactgccctgtgatcat |
40944861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 232
Target Start/End: Original strand, 22508205 - 22508414
Alignment:
| Q |
24 |
cacacgtatgcttaacagattctgcaggaacagcgtcttggtggaaactataatataactctctcgtctcatttgattgccaggtaccacctcctttttt |
123 |
Q |
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|||| |||||| ||||| |||||| |||||| | | |||||||||||||||| ||||||||||| | || |||| ||||||| ||||| || | |
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| T |
22508205 |
cacatgtatgcataacattttctgccggaacaacatattggtggaaactataaaataactctctcttgatcttcgatttccaggtatgacctctccttct |
22508304 |
T |
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| Q |
124 |
ctctgcttcatatggacggtaaaaccactgccctgtgatcattaaggtgtcattcggggattgtgtaatgtcctgacagaaaaacatctccgg-aatcag |
222 |
Q |
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|||||||||| |||||||||||| ||| ||||||| | ||| | | || |||||||| ||||||||||||||||||||| |||| |||||| |
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| T |
22508305 |
ttctgcttcatctggacggtaaaaaagatgcgttgtgatcttcaagttcccttttagggattgttcaatgtcctgacagaaaaacatagccggcaatcag |
22508404 |
T |
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| Q |
223 |
aaaattgaaa |
232 |
Q |
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||||| |||| |
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| T |
22508405 |
aaaatcgaaa |
22508414 |
T |
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