View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_low_18 (Length: 258)
Name: NF19891_low_18
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 54 - 189
Target Start/End: Complemental strand, 49930096 - 49929961
Alignment:
| Q |
54 |
ttcgttaatttcaaatgaagtgtgatcatttgaatgatattttgatctgaagatgatttgaaatagtctgatgtttacaatttgtaaaatttcagtagaa |
153 |
Q |
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| T |
49930096 |
ttcgttaatttcaaatgaagtgtgatcatttgaatgatattttgatctgaagatgatttgaaatagtctgatgtttacaatttgtaaaatttcagtagaa |
49929997 |
T |
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| Q |
154 |
aataaaaacttggagattttagataacaatatattg |
189 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
49929996 |
aataaaaacttggagattttagataacaatatattg |
49929961 |
T |
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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 165
Target Start/End: Complemental strand, 49924175 - 49924064
Alignment:
| Q |
54 |
ttcgttaattt-caaatgaagtgtgatcatttgaatgatattttgatctgaagatgatttgaaatagtctgatgtttacaatttgtaaaatttcagtaga |
152 |
Q |
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||||||||||| ||||||||| |||||| |||||| |||||||||| ||||||||||||||||||| |||| ||||| || ||||||||||||||| |
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| T |
49924175 |
ttcgttaattttcaaatgaag-gtgatcctttgaacaatattttgatgggaagatgatttgaaatagtatgataggtacaaattctaaaatttcagtaga |
49924077 |
T |
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| Q |
153 |
aaataaaaacttg |
165 |
Q |
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|||| || ||||| |
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| T |
49924076 |
aaatgaagacttg |
49924064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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