View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_low_20 (Length: 250)
Name: NF19891_low_20
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_low_20 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 3778269 - 3778505
Alignment:
| Q |
14 |
aaatagactaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
113 |
Q |
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| T |
3778269 |
aaatagactaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaa |
3778368 |
T |
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| Q |
114 |
gagaaaagttcttggaatgtagaagnnnnnnnccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggataca |
213 |
Q |
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| T |
3778369 |
gagaaaagttcttggaatgtagaagaaaaaaaccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggataca |
3778468 |
T |
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| Q |
214 |
acccggaatctgaatagggtcggtgtgatctttgtat |
250 |
Q |
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| T |
3778469 |
acccggaatctgaatagggtcggtgtgatctttgtat |
3778505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 250
Target Start/End: Complemental strand, 3707581 - 3707351
Alignment:
| Q |
20 |
actaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaa |
119 |
Q |
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| T |
3707581 |
actaatttggtggttttgttgtgctcctcctgcaaggctctccctgtacttgcctccatttttgagaaactattcgccaagaaaccatgagcaagagaca |
3707482 |
T |
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| Q |
120 |
agttcttggaatgtagaagnnnnnnnccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccgg |
219 |
Q |
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| T |
3707481 |
agttcttggaatgtagaagaaaaatactgtaagcaacactagatcgatcatgaaaaaattcgggaggaagatctttgccgagaataggtagacatcccgg |
3707382 |
T |
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| Q |
220 |
aatctgaatagggtcggtgtgatctttgtat |
250 |
Q |
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| T |
3707381 |
aatctgaataaggtcagtgtgatctttgtat |
3707351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 20 - 250
Target Start/End: Original strand, 3770614 - 3770844
Alignment:
| Q |
20 |
actaattgggtgctattgttgtgcattttctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaa |
119 |
Q |
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||||||| |||| | ||||||||| | ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3770614 |
actaatttggtggttttgttgtgctcctcctgcaaggctctccctgtactagcctccatttttgagaaactattcaccaagaaaccatgagcaagagaca |
3770713 |
T |
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| Q |
120 |
agttcttggaatgtagaagnnnnnnnccgtaagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccgg |
219 |
Q |
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||||||||||||||||||| | |||| | |||||||||||||||||||||||| ||||| |||||||||| | |||||| | ||||||||| |
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| T |
3770714 |
agttcttggaatgtagaagaaaaaaactgtaacgaacactagatcgatcatgaaaaaattcgggaggaagatcttggctacaaataggtagacaacccgg |
3770813 |
T |
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| Q |
220 |
aatctgaatagggtcggtgtgatctttgtat |
250 |
Q |
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|| ||||||| |||| || |||||||||||| |
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| T |
3770814 |
aaactgaataaggtcagtatgatctttgtat |
3770844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 250
Target Start/End: Complemental strand, 3719061 - 3718860
Alignment:
| Q |
49 |
ctgcaaggctctcgctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagaaaagttcttggaatgtagaagnnnnnnnccg |
148 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||| |
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| T |
3719061 |
ctgcaaggctctccctgtacttgcctccatttttgagaaactattcaccaagaaaccatgagcaagagacgagtttttgcaatgttgaagaaaaagctta |
3718962 |
T |
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| Q |
149 |
taagcaggactagatcgatcatgaaaaaattcaggagggagatcttggccatgaatagggatacaacccggaatctgaatagggtcggtgtgatctttgt |
248 |
Q |
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| T |
3718961 |
taaggaacgcaagaacgatcatgaaaaaattcgggaggaagatcttggcctcgaataggtagacaacctggaatctgaataggatcaatgtgatctttgt |
3718862 |
T |
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| Q |
249 |
at |
250 |
Q |
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|| |
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| T |
3718861 |
at |
3718860 |
T |
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