View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_low_22 (Length: 240)
Name: NF19891_low_22
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3771260 - 3771477
Alignment:
| Q |
1 |
taatagaactttggtggctaaatagaggaattgaaactactgctatatgagttcctttagccatggaattgcagttgatcgtttgtggcttatggtttgg |
100 |
Q |
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| T |
3771260 |
taatagaactttggtggctaaatagaggaattgaaactactgctatatgagttcctttagccatagaattgcagttgatcgtttgtggcttatggtttgg |
3771359 |
T |
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| Q |
101 |
tcattcaaattatatatatatcatcatactcttgaaattaaacaaaaatttaatgaacataattttcaccaattttattttatttaccactagtactaga |
200 |
Q |
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| T |
3771360 |
tcattcaaat----tatatatcatcatactcttgaaattaaacaaaaatttaatgaacataattttcaccaattttattttatttaccactagtactaga |
3771455 |
T |
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| Q |
201 |
ctacaatttatttgaggttgga |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
3771456 |
ctacaatttatttgaggttgga |
3771477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 3718444 - 3718329
Alignment:
| Q |
1 |
taatagaactttggtggctaaatagaggaattgaaactactgctatatgagttcctttagccatggaattgcagttgatcgtttgtggcttatggtttgg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
3718444 |
taatagaactttggtggctaaatagaggaattgaaactactgctatatgagttcctttagccatgaaattgcagttgatcgtttgtggtttatggtttgg |
3718345 |
T |
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| Q |
101 |
tcattcaaattatata |
116 |
Q |
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|||||||||||||||| |
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| T |
3718344 |
tcattcaaattatata |
3718329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 3778921 - 3779039
Alignment:
| Q |
1 |
taatagaactttggtggctaaatagaggaattgaaactactgctatatgagttcctttagccatggaattgcagttgatcgtttgtggcttatggtttgg |
100 |
Q |
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|||||||||||||||||||||| | |||||||||| |||| ||||||||||| ||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
3778921 |
taatagaactttggtggctaaacacaggaattgaagttactactatatgagttgttttagccatggaactgcagttgattgtttgtggcttatggtttgg |
3779020 |
T |
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| Q |
101 |
tcattcaaattatatatat |
119 |
Q |
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|| |||||||||||||||| |
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| T |
3779021 |
tctttcaaattatatatat |
3779039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3706935 - 3706866
Alignment:
| Q |
1 |
taatagaactttggtggctaaatagaggaattgaaactactgctatatgagttcctttagccatggaatt |
70 |
Q |
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||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
3706935 |
taatagaactttgatggctaaatagagggattgaaactactgctatatgagttgttttagccatggaatt |
3706866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 69
Target Start/End: Complemental strand, 3700244 - 3700186
Alignment:
| Q |
11 |
ttggtggctaaatagaggaattgaaactactgctatatgagttcctttagccatggaat |
69 |
Q |
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||||||||| |||||||| | ||||| |||||||||||||||| ||||||||| |||| |
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| T |
3700244 |
ttggtggctgaatagagggactgaaattactgctatatgagttgttttagccattgaat |
3700186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 196
Target Start/End: Original strand, 3779960 - 3779992
Alignment:
| Q |
164 |
tttcaccaattttattttatttaccactagtac |
196 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
3779960 |
tttcaccaattttattttatttacaactagtac |
3779992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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