View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_low_25 (Length: 223)
Name: NF19891_low_25
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 49930097 - 49929961
Alignment:
| Q |
18 |
attcgttaatttcaaatgaagtgtgatcatttgaatgatattttgatctgaagatgatttgaaatagtctgatgtttacaatttgtaaaatttcagtaga |
117 |
Q |
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| T |
49930097 |
attcgttaatttcaaatgaagtgtgatcatttgaatgatattttgatctgaagatgatttgaaatagtctgatgtttacaatttgtaaaatttcagtaga |
49929998 |
T |
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| Q |
118 |
aaataaaaacttggagattttagataacaatatattg |
154 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
49929997 |
aaataaaaacttggagattttagataacaatatattg |
49929961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 49924176 - 49924064
Alignment:
| Q |
18 |
attcgttaattt-caaatgaagtgtgatcatttgaatgatattttgatctgaagatgatttgaaatagtctgatgtttacaatttgtaaaatttcagtag |
116 |
Q |
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|||||||||||| ||||||||| |||||| |||||| |||||||||| ||||||||||||||||||| |||| ||||| || |||||||||||||| |
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| T |
49924176 |
attcgttaattttcaaatgaag-gtgatcctttgaacaatattttgatgggaagatgatttgaaatagtatgataggtacaaattctaaaatttcagtag |
49924078 |
T |
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| Q |
117 |
aaaataaaaacttg |
130 |
Q |
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||||| || ||||| |
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| T |
49924077 |
aaaatgaagacttg |
49924064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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