View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19891_low_3 (Length: 595)
Name: NF19891_low_3
Description: NF19891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19891_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 4 - 405
Target Start/End: Original strand, 6156052 - 6156462
Alignment:
| Q |
4 |
atcatgtgtttttaatttagactctataaaattttaatggnnnnnnnagtcttccataatattgtagtttataaaaataggtcatatcttaataactttt |
103 |
Q |
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| T |
6156052 |
atcatgtgtttttaatttagactctataaaattttaatggtttttttagtcttccataatattgtagtttataaaaatagttcatattttgataactttt |
6156151 |
T |
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| Q |
104 |
tt-aaaacaaattgtacttttaatcctcaaaatagttcctatagaatagagataagaactaagagtgaatgtgttc-----------taaacttaaaagc |
191 |
Q |
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| T |
6156152 |
tttaaaacaaattgtacttttaatcctcaaaatagtt--------atagagataagaactaagagtgaatgtgttacttttaaagattaaacttaaacgc |
6156243 |
T |
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| Q |
192 |
tcataattttacaagga-----atcatttgttttttacgaccaaatataaatttaatcttaatttagattaatttgaagagaaagtcacatgtttgatat |
286 |
Q |
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| T |
6156244 |
tcataattttgcaaggattaaaatcatttgtttttaacgaccaaatataaatttaatcctaatttagattaatttgaagagaaagtcacatgtttgatat |
6156343 |
T |
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| Q |
287 |
atgactggcccttcctttctacgatatgcctataataataaactcgaacatatcacaccattgttcaaattcttcatattttattctatcaagaaaaatc |
386 |
Q |
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| T |
6156344 |
atgactgacccttcctttctacgctatgcctataatgataaactcgaacatattgcaccattgttcaaattcttcatattttattctatcaagaaaaatc |
6156443 |
T |
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| Q |
387 |
ttcatatattttaagttaa |
405 |
Q |
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| T |
6156444 |
ttcatatattttgagttaa |
6156462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 520 - 579
Target Start/End: Original strand, 6162515 - 6162574
Alignment:
| Q |
520 |
aaaggaaaacgaattctctcatatgtaatttatacataaaagagtaaagcatgatttatc |
579 |
Q |
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| T |
6162515 |
aaaggaaaacaaattctctcatatgtaatttacagataaaagagtaaaacatgatttatc |
6162574 |
T |
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